Gene
RNA
| Item | Value |
|---|---|
| gene id | G332894 |
| gene name | fdft1 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048568.1 |
| NCBI id | CM023222.3 |
| chromosome length | 46841314 |
| location | 22649974 ~ 22658894 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| fdft1 | Predicted to enable farnesyl-diphosphate farnesyltransferase activity and squalene synthase activity. Predicted to be involved in cholesterol biosynthetic process and farnesyl diphosphate metabolic process. Predicted to act upstream of or within lipid biosynthetic process. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human FDFT1 (farnesyl-diphosphate farnesyltransferase 1). |
| description |
|---|
| Squalene synthetase, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU376844 | False | 1494 | lncRNA | 0.43 | 2 | 22649974 | 22658894 |
| TU376846 | True | 366 | lncRNA | 0.60 | 2 | 22649974 | 22653248 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110522337 | LOC106607938 | coding | downstream | 70030 | 22558143 ~ 22581302 (-) |
| LOC110522336 | hint3 | coding | downstream | 105259 | 22536132 ~ 22544715 (-) |
| LOC110522335 | NA | coding | downstream | 126986 | 22520703 ~ 22523380 (-) |
| LOC110522332 | LOC106607939 | coding | downstream | 141516 | 22499970 ~ 22508458 (-) |
| LOC110522331 | LOC106607940 | coding | downstream | 155141 | 22491363 ~ 22494833 (-) |
| LOC110522343 | LOC106607932 | coding | upstream | 2061 | 22659885 ~ 22674233 (-) |
| kcnk2b | kcnk2 | coding | upstream | 71211 | 22729005 ~ 22767960 (-) |
| LOC110522350 | smyd2 | coding | upstream | 296975 | 22955869 ~ 22982599 (-) |
| LOC110522431 | prox1 | coding | upstream | 409835 | 23068729 ~ 23108289 (-) |
| rps6kc1 | rps6kc1 | coding | upstream | 576421 | 23235315 ~ 23287385 (-) |
| G332906 | NA | non-coding | downstream | 415 | 22648418 ~ 22649559 (-) |
| G332897 | NA | non-coding | downstream | 2514 | 22646846 ~ 22647460 (-) |
| G332930 | NA | non-coding | downstream | 47798 | 22601946 ~ 22602176 (-) |
| G332929 | NA | non-coding | downstream | 48560 | 22601180 ~ 22601414 (-) |
| G332927 | NA | non-coding | downstream | 49253 | 22600406 ~ 22600721 (-) |
| G332944 | NA | non-coding | upstream | 22068 | 22680962 ~ 22681533 (-) |
| G332952 | NA | non-coding | upstream | 31924 | 22690818 ~ 22693322 (-) |
| G332969 | NA | non-coding | upstream | 64061 | 22722955 ~ 22723453 (-) |
| G332908 | NA | non-coding | upstream | 69724 | 22728618 ~ 22728934 (-) |
| G332867 | pol3 | other | downstream | 152245 | 22496923 ~ 22497729 (-) |
| G332823 | NA | other | downstream | 232065 | 22417282 ~ 22417909 (-) |
| LOC110521061 | LOC106607946 | other | downstream | 384493 | 22262381 ~ 22265570 (-) |
| vegfab | LOC106607898 | other | downstream | 721823 | 21921998 ~ 21947103 (-) |
| G331765 | LOC106607633 | other | downstream | 1101608 | 21543912 ~ 21556062 (-) |
| G333842 | LOC100136772 | other | upstream | 728167 | 23387061 ~ 23388570 (-) |
| G334252 | NA | other | upstream | 1279378 | 23938272 ~ 23939369 (-) |
| G334789 | NA | other | upstream | 1359578 | 24018472 ~ 24024503 (-) |
| G337147 | LOC106607991 | other | upstream | 2851616 | 25510510 ~ 25512780 (-) |
