G333079 (smyd2)


Basic Information

Item Value
gene id G333079
gene name smyd2
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 22955879 ~ 22958196 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU377043
CGTATTTAATAACTGCACTCGTAGTCAAGACctcaaatgtataaaatattttaACCACATAATTAAATAGATGATATCTCCATGACTTTACCATTCTCCTCCTACTGTGCTTTAAAACCAAGGAGAAGGGAAAGTGCCATACACTGTAGccctttgtgtgtgagagagagacaaagagagacttCATTTCTGTTACTCCCAGTGTGTGAGGTCACTTTGTTTATTTCTGCATCTCGATCTCTTTACGAAGCTCTATCAGATACTGATGATCCTTCCCATGAGCCACCTCCATTATGGCCATCGCCTTCTTCAGGGCATCGATGCCAGATAACTTTCTCTCCAGGCCCAGGTACAGACGGCCCAACTTCAGATACATGGAGGCCACATTCATGGAGTAGGGAGGGTACAGTATGCTGTAGGGTTTGAGGACCTTCTCTCCATAGCGGATGGCTTCGTCCCAATCCCCCATGTAGAGACACACTCCCATGGCCTGGTACATCATGTGCAGCATGTACACGTTGGAGTCCTCAAACACCTCACCCATCTTGTCCAGGCTCAGCTGGCACATCTCCATCAGCTCTCCAGGGGTTTTCTGATGTTTTTCTGCTATTTGTTTGGCAGAACGGAACTCTTTGATGGTGTTCCTAGCGTAGCGCATCATGCTACTGATCTCCTCCGGTCCTGGAGGCTTGTTTCTCTTACGCACCTTCAGCTTCA

Function

symbol description
smyd2 Enables p53 binding activity and protein-lysine N-methyltransferase activity. Involved in negative regulation of transcription by RNA polymerase II; peptidyl-lysine monomethylation; and regulation of DNA damage response, signal transduction by p53 class mediator. Located in cytoplasm.

NR:

description
N-lysine methyltransferase SMYD2-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU377043 True 717 TUCP 0.47 4 22955879 22958196
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110522349 ptpn14 coding upstream 451 22853423 ~ 22955428 (+)
LOC110522347 LOC106607950 coding upstream 106445 22814283 ~ 22849434 (+)
LOC110522345 LOC106607930 coding upstream 249370 22696828 ~ 22706509 (+)
LOC110522344 LOC106607931 coding upstream 262536 22684894 ~ 22693343 (+)
LOC110522342 LOC106607951 coding upstream 273566 22674306 ~ 22682313 (+)
LOC118964451 NA coding downstream 149652 23107820 ~ 23113334 (+)
snx9b snx9 coding downstream 366242 23324438 ~ 23357018 (+)
LOC100136772 LOC100136772 coding downstream 423996 23382192 ~ 23388570 (+)
LOC118964414 NA coding downstream 530826 23489022 ~ 23491763 (+)
parp1 parp1 coding downstream 536575 23494771 ~ 23506567 (+)
G333134 NA non-coding upstream 8986 22946650 ~ 22946893 (+)
G333133 NA non-coding upstream 9470 22946145 ~ 22946409 (+)
G333130 NA non-coding upstream 16337 22938988 ~ 22939542 (+)
G333086 NA non-coding upstream 86984 22866214 ~ 22868895 (+)
G333174 NA non-coding downstream 105983 23064179 ~ 23070412 (+)
G333189 NA non-coding downstream 138837 23097033 ~ 23098054 (+)
G333194 NA non-coding downstream 155960 23114156 ~ 23114411 (+)
G333195 NA non-coding downstream 156320 23114516 ~ 23114750 (+)
G332507 NA other upstream 362517 22592930 ~ 22593362 (+)
G332458 LOC106584613 other upstream 456883 22498500 ~ 22498996 (+)
LOC110522308 LOC106607893 other upstream 1254265 21683716 ~ 21701617 (+)
G330771 NA other upstream 2134722 20820668 ~ 20821157 (+)
G329626 NA other upstream 2701968 20252767 ~ 20253911 (+)
ccdc167 ccdc167 other downstream 787633 23745535 ~ 23748393 (+)
G334116 NA other downstream 875625 23833821 ~ 23837875 (+)
si:ch211-51e12.7 NA other downstream 1105635 24063831 ~ 24072963 (+)
G334475 NA other downstream 1459386 24417582 ~ 24418946 (+)
G334473 armt1 other downstream 1461918 24420114 ~ 24422731 (+)

Expression

G333079(smyd2) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.4.
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G333079(smyd2) Expression in each Bioproject

Bar chart with 10 bars.
G333079(smyd2) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00003753 NA coding CM030121.1 CM030121.1 17205313 ~ 17229181 (-)