G333252


Basic Information

Item Value
gene id G333252
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 23235319 ~ 23237428 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU377250
ATCCAGATGTGTGTTTATTAAGTTGTATTCCAGAGAGGACAGACTAATACATTAAACATTAAGAAACATAGAAAACCAACTATTGCAGGCACACATACATCTCTCACTGGTAGTGTTTGGCATCTCAGAGAATAGGTCATTGTAGGACATGGATAGTGACTAAGTGTACGGCTAACTGCTAGGTCCATGCCATGTCGTTAGTCAATCAATTAACCAGAGAGCCAGAACAAAATAGAGGAATCAATCAGGTTTGAATAGGGATTTTCAAATCATCAAGGTGTCCCCAAGTACTGGTCTATAATCAGTTTTTCCTCTGAGAAGTTTATGGTTATATTAGGTTagtgtaagctgatcctagatctgtggttagttACAGGCAGTATGCGATGGGATGCGCAGGAGGCAGTATGTGATGCGCAGGAGTTACATTGGGGATGACAGTGTTCTGCCATTATAACAAGGTAGGCAGCATACAGTGGGACTTGTAATAGGCGGAGTCTGTTAGGTCATCCGATGGGATCTCTACAttcattgtaaaaaaaattgtgtaGAAGTAGTGAGTGATTGAAAGTAGTAGGTATTGGTCAGAGTAGAAGTGGACACCAATGAGAATTAGGATTGGGTGTGAGACAGATGAATATAAATGACATTACAAGTTACCTTGACAACACACAAGATGGGGAGTTTTAGGCTACATGACAATGGACATGACGAGATCAATGCATGAACATCAATTATTGAATCTATAATAGTTGTCTTTTCATTAaatatgatatataatatattatcAAATGCACAGAAAAACactgatgtacagtacagtgggtTTCTCTGGGTAAAAAAAACACGCACCTTCGACTATACCATTCAGACAACCCTAAAAAAACATTACTCAACCATAATCCAACCAATATTCACCATTCAACCATTGTTCAACCATGGCAACTGTTATACAATGCATCTCCCGAGTACAatgccagtgtttcccctatattaattTAGCAGTGGCCAATCGTTGTCAACACTCCCAAAAATATGTCGGTTTTTTTTTATATGCAAAAATTCAAATAACTTTCAGGATAAAATGTTTTCAGTGTAAACGGAAacgactaaaaccagatataaaagTAGGTAGAAAAGCTAAGAGCTATATGTTTTAAAATAAGATcctctttgagaactaacaatcaccaaaacaAAAACTAGACAGTCTGGGAGAATCTAAAAGTCAAAAAGGGCATGGGGCCCCATAGATgttatgtttgagtcactcaaatgGCTTATGCCGTGTTCTAATgctatgacaaaatgtgtagaattgcaggaaactagcTTTAAAAGTCAAAAATGTTCTCACCGCCCCACAGCAAAATGTGTTTAATTATGTGTAGAATTGTAGTaaaagtgtagaattgcaggaaattagctttaaaacagtaaCATTTTCAGTCCGCCCCAAGGCaaagtgtagaattgcaggatattaaGCTTTGAAACAGCAACATTTTGGCTCTGCGGCCAAGAGGAGGGCATCTACAATTTTAGGTCGGAGAAAACAGTATGCAACCTATCAATACAGGGGAATGTATATggactgtgaaatgtcagaagaCCGTTGGTTGTCTTGTTGAAATAAGAAAAAGTTTAATTGACTTTGTGAACCACCCTTCCATAAAAGGACTAGTTAGTTTATTGCACCACATGCATCATGTCTCAACAGTCTAAGCTGCTCAACGTGAGGATAAAGAGAACGTCAGTGAGAGTAACATGTACACGGTAGGTGTGTAGACGATATGTCCAACTCCCCAACAAGAGTTCACTTGTTGACACTGGCCACGTCtgggtctctgtgtctgtgtgtgtgtttgtgcccacCCTGTCAGCAGCTCGATCCGCCCACAGCATTCATTTCTGACCTCCACCGTCCCACAATGCACTGGGCTTATTTGGGCCAGTCCACTCGGCCAAAGAAGGGATGTGATTTGATGTCCTCTGCTCCTGCCACCCCCGCCCCCAGCCTCTC

Function

NR:

description
LOW QUALITY PROTEIN: ribosomal protein S6 kinase delta-1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU377250 True 2023 lncRNA 0.40 3 23235319 23237428

Neighbor

gene id symbol gene type direction distance location
LOC118964451 NA coding upstream 122246 23107820 ~ 23113334 (+)
LOC110522349 ptpn14 coding upstream 279891 22853423 ~ 22955428 (+)
LOC110522347 LOC106607950 coding upstream 385885 22814283 ~ 22849434 (+)
LOC110522345 LOC106607930 coding upstream 528810 22696828 ~ 22706509 (+)
LOC110522344 LOC106607931 coding upstream 541976 22684894 ~ 22693343 (+)
snx9b snx9 coding downstream 87010 23324438 ~ 23357018 (+)
LOC100136772 LOC100136772 coding downstream 144764 23382192 ~ 23388570 (+)
LOC118964414 NA coding downstream 251594 23489022 ~ 23491763 (+)
parp1 parp1 coding downstream 257343 23494771 ~ 23506567 (+)
lin9 LOC106608031 coding downstream 271644 23509072 ~ 23525525 (+)
G333221 NA non-coding upstream 53049 23182068 ~ 23182270 (+)
G333214 NA non-coding upstream 83204 23147469 ~ 23152115 (+)
G333212 NA non-coding upstream 89142 23139304 ~ 23146177 (+)
G333206 NA non-coding upstream 107400 23127698 ~ 23127919 (+)
G333205 NA non-coding upstream 108895 23126188 ~ 23126424 (+)
G333348 NA non-coding downstream 163563 23400991 ~ 23404519 (+)
G333398 NA non-coding downstream 246040 23483468 ~ 23483704 (+)
G333399 NA non-coding downstream 246400 23483828 ~ 23484067 (+)
G333447 NA non-coding downstream 348790 23586218 ~ 23586493 (+)
G333079 smyd2 other upstream 277123 22955879 ~ 22958196 (+)
G332507 NA other upstream 641957 22592930 ~ 22593362 (+)
G332458 LOC106584613 other upstream 736323 22498500 ~ 22498996 (+)
LOC110522308 LOC106607893 other upstream 1533705 21683716 ~ 21701617 (+)
G330771 NA other upstream 2414162 20820668 ~ 20821157 (+)
ccdc167 ccdc167 other downstream 508401 23745535 ~ 23748393 (+)
G334116 NA other downstream 596393 23833821 ~ 23837875 (+)
si:ch211-51e12.7 NA other downstream 826403 24063831 ~ 24072963 (+)
G334475 NA other downstream 1180154 24417582 ~ 24418946 (+)
G334473 armt1 other downstream 1182686 24420114 ~ 24422731 (+)

Expression


Co-expression Network