G333842 (LOC100136772)


Basic Information

Item Value
gene id G333842
gene name LOC100136772
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 23387061 ~ 23388570 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU377905
TTTGTGTTGCTTGCCACAAAGCAGTATCTGTTTAATACATACATTTACAATATGGTACAATTTATCTCAATAAAAATAATGAGGAAAAATAGTATTCCATTTGAAATGATCTTCTCTCATACCCCACTCCCTACCCCAGTCTGTCATCTATACACAGTATTCAGTATGGTCACTGTTACCGAAGACTTTCTAAGTACTTCCTTCAATTTATACTTTCTCATACAGCATTCAAGCCATGGCCATAAATGTATTCTACAGCTATCAATGGCCCTATTCAATCAAAACCGTTATGGGCTATCTAGGGCAATGCTAATATCCCTTTCATATACAGACAAAAATCACACTATTTTACCATGCCAGCTTTTTATACAGTACAAGCTTTTTTTGTCATTCTGAAAGGGGTAAGGGTTAAAAAAAACATGGTAATTTAAAACCCACCTAAAGACCTAGTCATGATTCCTGTATTTTCACAGACCCtctaaccaaaatacaggtatcaggtctgtgtACAGTATGGTTCTCCGCTTATTTGCAGGTAAATTAATTAACACTTCGATTGTTTAACGGCACACCCTACCCTCCCAATTTGCCAGTTACCCACTGATATGTATAAAAGGGCATACCTGCAAATAAGTTGTAAATAAGGGGCTGTTTGAATGGGAACATTGCCTTATCTTTTTTACAGGTAACATATCATATCTTGTCTGAAATGTATATAAGACATTTTTTGGGGACTTATTTGTTGTTTCATTGTTTTATATTGCGGAGCTATAATTCGTTTTTTGTGTTACTCTGGAAACTTGGCTACAGATTAAATATGACCCTTAGTTTTCAACAGTTGCCACTGGTCTTCAAAACATTCAGTTCATCTTTCATCTTTTCCTCTTTACTACACTCATCctatccctTGTTCCTGCTGCCCTCCTCTACTGCTCGTTCTTAAGGGTGACATGCTTGAGCAGCGTGATCAGGGGCTTGTGGGATTGCTGGGTATATGGCTTCATGAAGCCACCGTAGCGCTTGATAGCGGTTGGGCTGCCCCAGCGGAAGTGACCCATCCGATAGGACCCATCCTTCTTATCTTGCAGCCCCGTCACAGTGAGGGTTCTGGGGACTACCTTGGTCTGAGCCTTGGCCCCCTGGTTCCCCAGAGCTCCCACCATCTCGTCCTCCCAGCTGCTCAGCTGCCTGCGTGCCTGCAGGGGAAAGGTGCCCTCGGAGGAGTCCCCCCCTTCCAGACTGGAGGCATAGACTTTGATGGGGCGGCGTTTGTGCCCAATGGGTTTGCCCCAGCGGAAGTGCTCCATGGAGTAGGAGTGTCTCTTGTCGCTGTGGGGCTCAGGGTCAGCATCCAGTGCTCTCTCTCCAGAGGTCAGGGCTGCCAACAGGATGCCCAGGGAGAGGCTCTCCTCAGTGGACTGCTGGGCAGCCGATCTGGGCTCTGGGGATTCGTCCTGGAGCCCAGACCTGAACAGGTGGATGCACTCC

Function

NR:

description
pro-opiomelanocortin B isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU377905 True 1488 TUCP 0.45 2 23387061 23388570
Loading

Neighbor

gene id symbol gene type direction distance location
si:ch211-203k16.3 LOC106608036 coding downstream 11047 23364507 ~ 23376014 (-)
moxd1l LOC106608039 coding downstream 80075 23299662 ~ 23306986 (-)
rps6kc1 rps6kc1 coding downstream 99676 23235315 ~ 23287385 (-)
LOC110522431 prox1 coding downstream 278772 23068729 ~ 23108289 (-)
LOC110522350 smyd2 coding downstream 404462 22955869 ~ 22982599 (-)
LOC110521069 LOC106608035 coding upstream 12416 23400986 ~ 23466207 (-)
LOC110522425 NA coding upstream 108843 23497413 ~ 23498740 (-)
mixl1 LOC106608032 coding upstream 137063 23525633 ~ 23527371 (-)
hebp2 LOC106608028 coding upstream 333491 23722061 ~ 23731816 (-)
kif25 kif25 coding upstream 344143 23732713 ~ 23746226 (-)
G333814 NA non-coding downstream 30050 23352714 ~ 23357011 (-)
G333744 NA non-coding downstream 176155 23210174 ~ 23210906 (-)
G333742 NA non-coding downstream 178146 23203772 ~ 23208915 (-)
G333718 NA non-coding downstream 210095 23176691 ~ 23176966 (-)
G333897 LOC106582599 non-coding upstream 97868 23486438 ~ 23486653 (-)
G333898 NA non-coding upstream 99106 23487676 ~ 23487877 (-)
G333882 parp1 non-coding upstream 113420 23501990 ~ 23503335 (-)
G333909 NA non-coding upstream 120146 23508716 ~ 23509004 (-)
LOC110522343 LOC106607932 other downstream 723154 22659885 ~ 22674233 (-)
G332867 pol3 other downstream 889332 22496923 ~ 22497729 (-)
G332823 NA other downstream 969152 22417282 ~ 22417909 (-)
LOC110521061 LOC106607946 other downstream 1121580 22262381 ~ 22265570 (-)
vegfab LOC106607898 other downstream 1458910 21921998 ~ 21947103 (-)
G334252 NA other upstream 549702 23938272 ~ 23939369 (-)
G334789 NA other upstream 629902 24018472 ~ 24024503 (-)
G337147 LOC106607991 other upstream 2121940 25510510 ~ 25512780 (-)
G337207 NA other upstream 2245147 25633717 ~ 25634063 (-)
G337894 NA other upstream 3378804 26767374 ~ 26770165 (-)

Expression

G333842(LOC100136772) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.4.
End of interactive chart.

G333842(LOC100136772) Expression in each Bioproject

Bar chart with 6 bars.
G333842(LOC100136772) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_04007545_04011744 NA coding CI01000029 null 4007545 ~ 4012008 (+)
bowfin (Amia calva) AMCG00003759 NA coding CM030121.1 CM030121.1 17576734 ~ 17577808 (+)