G333348


Basic Information

Item Value
gene id G333348
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 23400991 ~ 23404519 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU377352
GCCACGCCAACATTCGTAAAGTTAATTTATTTGACAACCAATCAAATGACAATcaggatgaaaaaaaaaaaaaacagctgagCAGGACAAACATTCAGGATCAGGAggatacagtcagtcagtcagttaatgcTGCACAGTAGTGTTTTAATAACAATACAAACATCACATACTGCAGTCTATCAAACTATGGGAGAGAGAACACCTCACCTATAGTCTGACAATCAGTCACACACAACCGCATGCTGTTGTATTGTGATGGAAAAACCTACGACTGTTTGAAACACTGTAGCCTATTATACATAAATAATTCAATTTCACCTGGAAAAGCTAGGTGAAATCACAGGGGGACATTCTACCACAGTCCAGTCTCACTTCTGAGATGAGCTTTActcagagatagatagaggacttatCTTtgtatctgtggcattgtagcgtctgtgacagcatgggcagcaccattttgaagtagtcaaatTTCTTCATGGTTGTCTGATCCAATGAATTTGGAAGttccacccagttgactacattcaaatggtggaagccctcaacgtcACTGCCAATGCTAAGACGGTCTCTTCTTTTACTAATTGGCAATGAATTATGCTGATTTCTACTACGTAGCTGTCTGTTAAAATGTTGCTGTATGTACACCAACTGTGTGGGCGTCCGACTGTATTTGACAATATGTCTACATCTTACGACATTGCTACTGAGAGACATGGTGCTTCTACAACAGCCATACTACATACAGTTCAATTAAAAAGTATGTGTTTTTCTTATAATTTCAGCAATAAAGGTTTCTTTGAAACAGAACATCTTCAGTGCAATTGGCAAAGACTAAATTAAATGTTTCATGGAAATTTGATCAGGAAGAAACAGTAACATACATAAATTCAGCTAGATGGTCATTGAACTGTACGTAGCTACATCACTAGCATGCAAAGTCAGGTCCAGCACTCATCATAAGGCATTTTCTCCATGTACAAGCTGCCTCTGTCACTAGGGAATCCAGTTTAAAGTGCAAAGTTCACAGATGAGATAGTTTGACCTACAGCACTACAATGTAAAGAGCTACATTTACTATACAAGGAAAAGGAGATGAGTGGACAGAAAGGTGTAACAGATCTAATAAGCATTAGATTTACACCAAGCAGAACTGTTGTTGTTTAGTTCAAAATAAATGTACCCACATGAAAAACAtaagtttactatagaatactacagtacttactatactACACAATGTAGTATCCcccgatcatgtgtagtacttactatagaatattGAAgtacactatagtaaatactacagtattatctgCCAAAAAAACACTGTAGTGTTCATCTGTTACTGTGACTTGTTATTGGCTTCGTTGGAAGGATAGAGAGCTGCGTGATGCTGATTACATTGTTCTTcatgagaaggaggaagaggagttaaTGGACTGGGTTGTAAACTGGGTCTGATCATTAGTTTGGTCTTGGGGTGATGACTGAATAGACAAGCACACACGGATGCACGGACgaacacacacaatgacaaagttaCTCAGTAAACATGAACCTTGTAAAAATTGAAACGTCAATGGACAATCCGGTAAACTACTGGCATGGGTTGACTTGACAGAGACAATACATAGTAGAAACAAAACCTACAGAACACTGCATTATGGGCAGTTAACACTAATCACAATATGACATTTTGTCAGTGACAGACATCAACTGGTTATGACAGTGACACATATAGAGCACACCCAGTTTACACGAGCACAGCACAGTTTGAGAGTCAGTTGACACTAGCACAGGAAGGAAGGAGTCTCACAATGTCACGGGTACAGAAGGTCCAGGTACAGAAGTCATTTATTAAAACACAGAATATGGACTATCTTCAGATGGGGCTATTTCAGCCTGGAAGGCCAGTCTGTTTCGGAGTTGGCTAAACTGGACTCTAGACTGCCTGATCTGGCTAGTTCAGAAAACCTCAAACCATCATAAGACCTATAATTATTGCCATTGTACTTTGTTTTGCGACAATCTGTAAGAGCATGAGCTGAAATTACGAGCCCCAGACACACCGGCAGAGACATTCTTATGAAGCTACTTCTGTGACCAGTATCTACTGTCCAGTCCAGGCTCGTCTCTCTCCACTCACATACAAAGGGCAAACAATCATAACGATGACGTCATCAGTAGGGAAAGGATGAGGAGGATCTGATATAATAACGTGGCACTATCATTGGACTAAACACACTGACTCTAGTTGTAATAAAGGATAATTATGGCAGTATGATTACAGGGAGGGGGGTATGTTGCTAACTTGCTTTCCCTCCTGCAACATCGCTCTGGTGTATTACAGACGTTAAGATGTCTGAGGGAACTACACACTAGATCATCTCTAACGTCTCTGGTTTTAAAACGGCCcgtgtggcatcgatatgagtcataAACATtcattctagtgtcaaaattgattACAAAGTGAAATAGGATAAAACCTAGTTTATGAAGTGAATAGGTCATGACTTCCTGAAGCGTTGGGTATGGATTAGGATCATGCCCACTAGCAGCCATGACCTCCAGACAGTGAGACATACCTGCCAATTACGCAGCGCCTCAGActtgtttacataagacaacCCGTCACCAATGTTATGTTGAAATAACCATTGGCCCTAAGCCCTTTAAGGACTGGCCACATGCGGATGTTTTGAAAGTGTCAAACCCCCGAGTCTGACACTTTTTTGGGGCAAAATGAGAATTGAGATGATCTTATATCGCACTTGTATCCCATCTGCAACTCAATTTTGAGTGACTTGATAAGCTGATTGTGGCCTGGTTGTGCTCAATACGCCTTCTAGCTACTACTTGCTAGCTTCATTGACAAACAGAGTTGTAATTTAGCTGGAAAGTGATTTTGGGCACTGATAAACAGCTTGCAGATGAAGTTGTAGACAAGTTATTGTTCTCAGAAATCAGTCCTGAGCGCGCAGCCAGACTTTCCCGACTCGATAGACTGTATGCAGTGCACGGGCTAGTTTTTCATGCACATTTATTTACTTGAGatatactgcaccaaacaccttagctAGATCTAAAATTGCACGACTAAATTAATTACAGATGTTTTTATTAATCTTAAATTAAATCGGACTATTTTGAAGAAGTGGCTGTGTTATTGTACAGTGACTCAGGAGGGACAAACAACAGTACCTGTCAGGGTACGATTAAGTGAACACAACACACCCACATCAATCCACACCCCTAAGACAACTCTCATTTGACTTCAGCCATGGCCACTGGCATTTCTTAATGAGCAATCTTCAAAATGAGGCTACATCAGGAAGTGCAATCGCACTTTAATATGTCTGAGGGAACTACTCCCTAGATCTTCATCACTCTCCTCCACTGCTCTCTGTCTGGCAGTAACTCTAAACATAATATGGCAGTCTCTTTACAGGCCATCCCTGTTCCAGACACAGTCCGTCCTGATTTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU377352 True 3504 lncRNA 0.41 2 23400991 23404519

Neighbor

gene id symbol gene type direction distance location
LOC100136772 LOC100136772 coding upstream 12421 23382192 ~ 23388570 (+)
snx9b snx9 coding upstream 43973 23324438 ~ 23357018 (+)
LOC118964451 NA coding upstream 287918 23107820 ~ 23113334 (+)
LOC110522349 ptpn14 coding upstream 445563 22853423 ~ 22955428 (+)
LOC110522347 LOC106607950 coding upstream 551557 22814283 ~ 22849434 (+)
LOC118964414 NA coding downstream 84503 23489022 ~ 23491763 (+)
parp1 parp1 coding downstream 90252 23494771 ~ 23506567 (+)
lin9 LOC106608031 coding downstream 104553 23509072 ~ 23525525 (+)
LOC110522421 LOC106608030 coding downstream 125393 23529912 ~ 23538153 (+)
nhsl1b nhsl1 coding downstream 137930 23542449 ~ 23719666 (+)
G333252 NA non-coding upstream 163563 23235319 ~ 23237428 (+)
G333221 NA non-coding upstream 218721 23182068 ~ 23182270 (+)
G333214 NA non-coding upstream 248876 23147469 ~ 23152115 (+)
G333212 NA non-coding upstream 254814 23139304 ~ 23146177 (+)
G333398 NA non-coding downstream 78949 23483468 ~ 23483704 (+)
G333399 NA non-coding downstream 79309 23483828 ~ 23484067 (+)
G333447 NA non-coding downstream 181699 23586218 ~ 23586493 (+)
G333452 NA non-coding downstream 191910 23596429 ~ 23596646 (+)
G333464 NA non-coding downstream 215577 23620096 ~ 23620517 (+)
G333079 smyd2 other upstream 442795 22955879 ~ 22958196 (+)
G332507 NA other upstream 807629 22592930 ~ 22593362 (+)
G332458 LOC106584613 other upstream 901995 22498500 ~ 22498996 (+)
LOC110522308 LOC106607893 other upstream 1699377 21683716 ~ 21701617 (+)
G330771 NA other upstream 2579834 20820668 ~ 20821157 (+)
ccdc167 ccdc167 other downstream 341310 23745535 ~ 23748393 (+)
G334116 NA other downstream 429302 23833821 ~ 23837875 (+)
si:ch211-51e12.7 NA other downstream 659312 24063831 ~ 24072963 (+)
G334475 NA other downstream 1013063 24417582 ~ 24418946 (+)
G334473 armt1 other downstream 1015595 24420114 ~ 24422731 (+)

Expression


Co-expression Network