G333477


Basic Information

Item Value
gene id G333477
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 23642091 ~ 23642446 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU377507
gtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggctcaaaccatgatgctgccaccaccatgtttgacagtgtggatggtgtgttcagggtgatgagctgtgttgcttttacgccaaacataatgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgt

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU377507 True 356 lncRNA 0.43 1 23642091 23642446

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-7 NA coding upstream 91261 23550757 ~ 23550830 (+)
LOC110522421 LOC106608030 coding upstream 103938 23529912 ~ 23538153 (+)
lin9 LOC106608031 coding upstream 116566 23509072 ~ 23525525 (+)
parp1 parp1 coding upstream 135524 23494771 ~ 23506567 (+)
LOC118964414 NA coding upstream 150328 23489022 ~ 23491763 (+)
ccdc167 ccdc167 coding downstream 103089 23745535 ~ 23748393 (+)
LOC110522416 NA coding downstream 126043 23768487 ~ 23772991 (+)
si:ch211-225h24.2 tdrp coding downstream 136165 23778611 ~ 23801507 (+)
acp1 NA coding downstream 224294 23866740 ~ 23879587 (+)
LOC110522408 LOC106608020 coding downstream 382488 24024934 ~ 24034274 (+)
G333475 NA non-coding upstream 3747 23638084 ~ 23638344 (+)
G333474 NA non-coding upstream 4464 23637279 ~ 23637627 (+)
G333466 NA non-coding upstream 14756 23627096 ~ 23627335 (+)
G333464 NA non-coding upstream 21574 23620096 ~ 23620517 (+)
G333452 NA non-coding upstream 45445 23596429 ~ 23596646 (+)
G333479 NA non-coding downstream 1658 23644104 ~ 23644314 (+)
G333481 NA non-coding downstream 2654 23645100 ~ 23645684 (+)
G333482 NA non-coding downstream 3713 23646159 ~ 23646451 (+)
G333484 NA non-coding downstream 6219 23648665 ~ 23648953 (+)
G333487 NA non-coding downstream 16286 23658732 ~ 23658946 (+)
G333079 smyd2 other upstream 683895 22955879 ~ 22958196 (+)
G332507 NA other upstream 1048729 22592930 ~ 22593362 (+)
G332458 LOC106584613 other upstream 1143095 22498500 ~ 22498996 (+)
LOC110522308 LOC106607893 other upstream 1940477 21683716 ~ 21701617 (+)
G330771 NA other upstream 2820934 20820668 ~ 20821157 (+)
G334116 NA other downstream 191375 23833821 ~ 23837875 (+)
si:ch211-51e12.7 NA other downstream 421385 24063831 ~ 24072963 (+)
G334475 NA other downstream 775136 24417582 ~ 24418946 (+)
G334473 armt1 other downstream 777668 24420114 ~ 24422731 (+)

Expression


Co-expression Network