G334116


Basic Information

Item Value
gene id G334116
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 23833821 ~ 23837875 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU378192
atgagactcgaaattgagctcaggtgcatcctgtttccattgatcatccttgacatgtttctacaacctgattggagtccacctgtggtaaattcaattgattggacatgatttggaaaggcacacacctttctatataaggtcccacagttgacagtgcatatcagagcaaaaaccaagccatgtcgaaggaattgtctgtagagatccgagacaggattttgtcaatgcacagatatggggaagggtaccaaaacatttctgcagcattgaaggtccccaagaacacagtggccttcatcattcttaagtggaggacgtttggaaccaccaagactctttctagagttGGCAGCCTGGCCAAACTCAGCAATCAGGGCAGAAGAGCCTTGGTCAATGAGGTgagcaagaacccgatggtcactctgacagagctccagagttcctctgtggagatgggaggaccttcgagaaggacaaccatctctgcagccctctaccaatccggcctttatggtggagtggcctgacggaagccactcctcagtaaaaggcaattGACAGCCCGTttgacaacgcaggagtgacaagtctctgaatgt
>TU378190
gggagaacagagagagagggaaattgaGACGAGTGCTAGTGACGGAATGTGCAAGAAAAAAAAAGGAAGAGATATTCAGTTACATTCCATCATTGACCTTTAACctaatacattttcaaatgacCAGGTGCACTCTCTCATGGCTGCTTCATGACTACCTGCCCGAGAGACAAGAAACCTTTGTTCCGGTTGCCTCGAGCTCAGACAATGATATTTATGCCCAGTATTGAGTGACCTGTTTAATGATTCTACAATGTGGCAGTAACTAGATATGCTTTGGCATTCCAATAGAACTGTTCATGAAAATTGTAATCCAGAAGAAGTTAACAGTTTAATTGACATaagaacacatactgtacaaaggTCTATTTCCACCAGAAATAGAGGTCATGTCTATAAAAATAACAGCAATAATAAAACCTAGTCCAAAGATATACCTCACAGATTGTCTTGGTTGACTATTTGGACTTGTAACATTTGTACTAATACATAAGCATTCACACACAACCAATAAACGTGTTTTATCAGCGAAGTAGTGATCAGTGAAatcacacacacgtttgtttttactatccttgtggggaccaaacaattgattctcattcaaaatcatattttccctaaccctaattgtaacccaaACACCTATCTCTAAAAttgcctttttccttgtgggaaCAAGCAACATTTCCTCCACTTACCTGAATTGTCCttattttactatccttgtgaggacttctgttCCGCACAAGGCtagtaaaacaaaaacacacacacacacaaacatataaccTATTGTGCAATAGCCAAGAAAACATTGTGTGAAGGCCAGGAATGTCATATAGTATTTCAGAGGCAGACGCAGTTTAACATTTTAGTGGGTAAGGAATAGCTAAAGTTATGTTGTAGGACTAGGCCTAAAACAGGCAGCCTATAGGCAGAGCCTAATAGAGAGGCCTACACTGCTAAATAAGCCTATACGTAGGCGTTGAATACAGAAATGTCAGTTTAGATCTCGTAATTTCTTCCCAGACTCTTTGGCATTTTTACAGCTGTACAGCCATTTTATAATCCTGGCATTGCGCTCAATGACCGATGTCCCCTGTCGAACAGTTTCATGCATCTCCTCTTCCAGTAATCCTTCGTTACTGTCCTCGCCACTATTCCGTGTGAACCCGTCATCTGACGTCGAGATGCTGACGCTTCGGATTTTATTGACACGTTCATCCGAACATGCGGAAAAGTTCTCTTTGCCCAGGGACTCAATGACTTCGCCATTCAGTCCGCAGTATTTGAAGAAGGCATCAAAGTCGGCAAAGTTTTTGGAATATCTTGAGCTGATGTCAGAGTGAGAACGGCCGACCCCTTTGCGAGTCCTCCTCTGAACTTCCGCTACTCTTTTGTGAGTGGGTCTCTGCATCACACCTGGGGACACGTTTATGTCCGTCCATTCTTCATCTGTGGATAGAGATTGTGTTTCTGGCTGTATGGGTTTCGAATAGCCAGCCTTTGAATCACATTCCTTGGCAAGTCCTTCGGGTGTCGTAAATTTGGTATACATTTCCTCTGCCTCACATTCCTTACCTGATGCCTCAGGTAGTAAACTTGCCTTATCCAGAGAGCTGAGCAACAACCTGCGCCCCAAATTCAGTTTATTTTTCTCACGCGTCGATGCTTTCACAAGTTCACATTTCTGTCGGTACAGTAAAAGTGAGTCTCTTCTTTTGGAGCTCGTCCGATGCACCGCATTTTTGTCCTCCGGCGGCGAAGGCCCTCCTTGCACACTGCTTGTACCCGCAGGCGAATTCCTCCCACTGTTCCTACAGTTCATGTCGGAGCCCCGGTTAGACGATCCGTTACTACTAACAGAGGCAGATCCAAAACTAACCACGGGCTCCTGTATCGAGTTGAACACCTGTTGACTTTTGACATACTGTTTTTTACTTGCGGCAAGCATCTCCACTGCGCTCATGCGTCCCGTCTCCTCGCTCTCCAGTTCCATCTGTTTCCGAAGGTATTCCGGACCCTTCTCTAGAATTCGAGTGGCATCTACACCTTTGTTAGTCATATTGTTGGTTTTTGCTTTCAAAACACTACCCTAGCTGGCATTCCAAAACTGTATTCAGGATGTAAAGGGGTCCCACGTTACCAATCCATGTTCGCGCAGTGCTCAAATATCCAGAAGCTCGAAGTAAGAACAATTCAATGTTCTACTGTACAAACAAGCTCGTGCCTTGTC
>TU378195
TGTTTAATGATTCTACAATGTGGCAGTAACTAGATATGCTTTGGCATTCCAATAGAACTGTTCATGAAAATTGTAATCCAGAAGAAGTTAACAGTTTAATTGACATaagaacacatactgtacaaaggTCTATTTCCACCAGAAATAGAGGTCATGTCTATAAAAATAACAGCAATAATAAAACCTAGTCCAAAGATATACCTCACAGATTGTCTTGGTTGACTATTTGGACTTGTAACATTTGTACTAATACATAAGCATTCACACACAACCAATAAACGTGTTTTATCAGCGAAGTAGTGATCAGTGAAatcacacacacgtttgtttttactatccttgtggggaccaaacaattgattctcattcaaaatcatattttccctaaccctaattgtaacccaaACACCTATCTCTAAAAttgcctttttccttgtgggaaCAAGCAACATTTCCTCCACTTACCTGAATTGTCCttattttactatccttgtgaggacttctgttCCGCACAAGGCtagtaaaacaaaaacacacacacacacaaacatataaccTATTGTGCAATAGCCAAGAAAACATTGTGTGAAGGCCAGGAATGTCATATAGTATTTCAGAGGCAGACGCAGTTTAACATTTTAGTGGGTAAGGAATAGCTAA
>TU378193
AGAAGAAGTTAACAGTTTAATTGACATaagaacacatactgtacaaaggTCTATTTCCACCAGAAATAGAGGTCATGTCTATAAAAATAACAGCAATAATAAAACCTAGTCCAAAGATATACCTCACAGATTGTCTTGGTTGACTATTTGGACTTGTAACATTTGTACTAATACATAAGCATTCACACACAACCAATAAACGTGTTTTATCAGCGAAGTAGTGATCAGTGAAatcacacacacgtttgtttttactatccttgtggggaccaaacaattgattctcattcaaaatcatattttccctaaccctaattgtaacccaaACACCTATCTCTAAAAttgcctttttccttgtgggaaCAAGCAACATTTCCTCCACTTACCTGAATTGTCCttattttactatccttgtgaggacttctgttCCGCACAAGGCtagtaaaacaaaaacacacacacacacaaacatataaccTATTGTGCAATAGCCAAGAAAACATTGTGTGAAGGCCAGGAATGTCATATAGTATTTCAGAGGCAGACGCAGTTTAACATTTTAGTGGGTAAGGAATAGCTAAAGTTATGTTGTAGGACTAGGCCTAAAACAGGCAGCCTATAGGCAGAGCCTAATAGAGAGGCCTACACTGCTAAATAAGCCTATACGTAGGCGTTGAATACAGAAATGTCAGTTTAGATCTCGTAATTTCTTCCCAGACTCTTTGGCATTTTTACAGCTGTACAGCCATTTTATAATCCTGGCATTGCGCTCAATGACCGATGTCCCCTGTCGAACAGTTTCATGCATCTCCTCTTCCAGTAATCCTTCGTTACTGTCCTCGCCACTATTCCGTGTGAACCCGTCATCTGACGTCGAGATGCTGACGCTTCGGATTTTATTGACACGTTCATCCGAACATGCGGAAAAGTTCTCTTTGCCCAGGGACTCAATGACTTCGCCATTCAGTCCGCAGTATTTGAAGAAGGCATCAAAGTCGGCAAAGTTTTTGGAATATCTTGAGCTGATGTCAGAGTGAGAACGGCCGACCCCTTTGCGAGTCCTCCTCTGAACTTCCGCTACTCTTTTGTGAGTGGGTCTCTGCATCACACCTGGGGACACGTTTATGTCCGTCCATTCTTCATCTGTGGATAGAGATTGTGTTTCTGGCTGTATGGGTTTCGAATAGCCAGCCTTTGAATCACATTCCTTGGCAAGTCCTTCGGGTGTCGTAAATTTGGTATACATTTCCTCTGCCTCACATTCCTTACCTGATGCCTCAGGTAGTAAACTTGCCTTATCCAGAGAGCTGAGCAACAACCTGCGCCCCAAATTCAGTTTATTTTTCTCACGCGTCGATGCTTTCACAAGTTCACATTTCTGTCGGTACAGTAAAAGTGAGTCTCTTCTTTTGGAGCTCGTCCGATGCACCGCATTTTTGTCCTCCGGCGGCGAAGGCCCTCCTTGCACACTGCTTGTACCCGCAGGCGAATTCCTCCCACTGTTCCTACAGTTCATGTCGGAGCCCCGGTTAGACGATCCGTTACTACTAACAGAGGCAGATCCAAAACTAACCACGGGCTCCTGTATCGAGTTGAACACCTGTTGACTTTTGACATACTGTTTTTTACTTGCGGCAAGCATCTCCACTGCGCTCATGCGTCCCGTCTCCTCGCTCTCCAGTTCCATCTGTTTCCGAAGGTATTCCGGACCCTTCTCTAGAATTCGAGTGGCATCTACACCTTTGTTAGTCATATTGTTGGTTTTTGCTTTCAAAACACTACCCTAGCTGGCATTCCAAAACTGTATTCAGGATGTAAAGGGGTCCCACGTTACCAATCCATGTTC
>TU378191
ATAAAACCTAGTCCAAAGATATACCTCACAGATTGTCTTGGTTGACTATTTGGACTTGTAACATTTGTACTAATACATAAGCATTCACACACAACCAATAAACGTGTTTTATCAGCGAAGTAGTGATCAGTGAAatcacacacacgtttgtttttactatccttgtggggaccaaacaattgattctcattcaaaatcatattttccctaaccctaattgtaacccaaACACCTATCTCTAAAAttgcctttttccttgtgggaaCAAGCAACATTTCCTCCACTTACCTGAATTGTCCttattttactatccttgtgaggacttctgttCCGCACAAGGCtagtaaaacaaaaacacacacacacacaaacatataaccTATTGTGCAATAGCCAAGAAAACATTGTGTGAAGGCCAGGAATGTCATATAGTATTTCAGAGGCAGACGCAGTTTAACATTTTAGTGGGTAAGGAATAGCTAAAGTTATGTTGTAGGACTAGGCCTAAAACAGGCAGCCTATAGGCAGAGCCTAATAGAGAGGCCTACACTGCTAAATAAGCCTATACGTAGGCGTTGAATACAGAAATGTCAGTTTAGATCTCGTAATTTCTTCCCAGACTCTTTGGCATTTTTACAGCTGTACAGCCATTTTATAATCCTGGCATTGCGCTCAATGACCGATGTCCCCTGTCGAACAGTTTCATGCATCTCCTCTTCCAGTAATCCTTCGTTACTGTCCTCGCCACTATTCCGTGTGAACCCGTCATCTGACGTCGAGATGCTGACGCTTCGGATTTTATTGACACGTTCATCCGAACATGCGGAAAAGTTCTCTTTGCCCAGGGACTCAATGACTTCGCCATTCAGTCCGCAGTATTTGAAGAAGGCATCAAAGTCGGCAAAGTTTTTGGAATATCTTGAGCTGATGTCAGAGTGAGAACGGCCGACCCCTTTGCGAGTCCTCCTCTGAACTTCCGCTACTCTTTTGTGAGTGGGTCTCTGCATCACACCTGGGGACACGTTTATGTCCGTCCATTCTTCATCTGTGGATAGAGATTGTGTTTCTGGCTGTATGGGTTTCGAATAGCCAGCCTTTGAATCACATTCCTTGGCAAGTCCTTCGGGTGTCGTAAATTTGGTATACATTTCCTCTGCCTCACATTCCTTACCTGATGCCTCAGGTAGTAAACTTGCCTTATCCAGAGAGCTGAGCAACAACCTGCGCCCCAAATTCAGTTTATTTTTCTCACGCGTCGATGCTTTCACAAGTTCACATTTCTGTCGGTACAGTAAAAGTGAGTCTCTTCTTTTGGAGCTCGTCCGATGCACCGCATTTTTGTCCTCCGGCGGCGAAGGCCCTCCTTGCACACTGCTTGTACCCGCAGGCGAATTCCTCCCACTGTTCCTACAGTTCATGTCGGAGCCCCGGTTAGACGATCCGTTACTACTAACAGAGGCAGATCCAAAACTAACCACGGGCTCCTGTATCGAGTTGAACACCTGTTGACTTTTGACATACTGTTTTTTACTTGCGGCAAGCATCTCCACTGCGCTCATGCGTCCCGTCTCCTCGCTCTCCAGTTCCATCTGTTTCCGAAGGTATTCCGGACCCTTCTCTAGAATTCGAGTGGCATCTACACCTTTGTTAGTCATATTGTTGGTTTTTGCTTTCAAAACACTACCCTAGCTGGCATTCCAAAACTGTATTCAGGATGTAAAGGGGTCCCACGTTACCAATCCATGTTCGCGCAGTGCTCAAATATCCAGAAGCTCGAAGTAAGAACAATTCAATGTTCTACTGTACAAACAAGCTCGTGCCTTGTC
>TU378194
ATAAAACCTAGTCCAAAGATATACCTCACAGATTGTCTTGGTTGACTATTTGGACTTGTAACATTTGTACTAATACATAAGCATTCACACACAACCAATAAACGTGTTTTATCAGCGAAGTAGTGATCAGTGAAatcacacacacgtttgtttttactatccttgtggggaccaaacaattgattctcattcaaaatcatattttccctaaccctaattgtaacccaaACACCTATCTCTAAAAttgcctttttccttgtgggaaCAAGCAACATTTCCTCCACTTACCTGAATTGTCCttattttactatccttgtgaggacttctgttCCGCACAAGGCtagtaaaacaaaaacacacacacacacaaacatataaccTATTGTGCAATAGCCAAGAAAACATTGTGTGAAGGCCAGGAATGTCATATAGTATTTCAGAGGCAGACGCAGTTTAACATTTTAGTGGGTAAGGAATAGCTAAAGTTATGTTGTAGGACTAGGCCTAAAACAGGCAGCCTATAGGCAGAGCCTAATAGAGAGGCCTACACTGCTAAATAAGCCTATACGTAGGCGTTGAATACAGAAATGTCAGTTTAGATCTCGTAATTTCTTCCCAGACTCTTTGGCATTTTTACAGCTGTACAGCCATTTTATAATCCTGGCATTGCGCTCAATGACCGATGTCCCCTGTCGAACAGTTTCATGCATCTCCTCTTCCAGTAATCCTTCGTTACTGTCCTCGCCACTATTCCGTGTGAACCCGTCATCTGACGTCGAGATGCTGACGCTTCGGATTTTATTGACACGTTCATCCGAACATGCGGAAAAGTTCTCTTTGCCCAGGGACTCAATGACTTCGCCATTCAGTCCGCAGTATTTGAAGAAGGCATCAAAGTCGGCAAAGTTTTTGGAATATCTTGAGCTGATGTCAGAGTGAGAACGGCCGACCCCTTTGCGAGTCCTCCTCTGAACTTCCGCTACTCTTTTGTGAGTGGGTCTCTGCATCACACCTGGGGACACGTTTATGTCCGTCCATTCTTCATCTGTGGATAGAGATTGTGTTTCTGGCTGTATGGGTTTCGAATAGCCAGCCTTTGAATCACATTCCTTGGCAAGTCCTTCGGGTGTCGTAAATTTGGTATACATTTCCTCTGCCTCACATTCCTTACCTGATGCCTCAGGTAGTAAACTTGCCTTATCCAGAGAGCTGAGCAACAACCTGCGCCCCAAATTCAGTTTATTTTTCTCACGCGTCGATGCTTTCACAAGTTCACATTTCTGTCGGTACAGTAAAAGTGAGTCTCTTCTTTTGGAGCTCGTCCGATGCACCGCATTTTTGTCCTCCGGCGGCGAAGGCCCTCCTTGCACACTGCTTGTACCCGCAGGCGAATTCCTCCCACTGTTCCTACAGTTCATGTCGGAGCCCCGGTTAGACGATCCGTTACTACTAACAGAGGCAGATCCAAAACTAACCACGGGCTCCTGTATCGAGTTGAACACCTGTTGACTTTTGACATACTGTTTTTTACTTGCGGCAAGCATCTCCACTGCGCTCATGCGTCCCGTCTCCTCGCTCTCCAGTTCCATCTGTTTCCGAAGGTATTCCGGACCCTTCTCTAGAATTCGAGTGGCATCTACACCTTTGTTAGTCATATTGTTGGTTTTTGCTTTCAAAACACTACCCTAGCTGGCATTCCAAAACTGTATTCAGGATGTAAAGGGGTCCCACGTTACCAATCCATGTTC

Function

NR:

description
protein FAM110C

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU378192 False 602 TUCP 0.48 1 23833821 23834422
TU378190 False 2239 lncRNA 0.43 1 23835637 23837875
TU378195 False 660 lncRNA 0.35 1 23835873 23836532
TU378193 False 1846 lncRNA 0.44 1 23835952 23837797
TU378191 False 1826 lncRNA 0.44 1 23836050 23837875
TU378194 True 1748 lncRNA 0.44 1 23836050 23837797

Neighbor

gene id symbol gene type direction distance location
si:ch211-225h24.2 tdrp coding upstream 34130 23778611 ~ 23801507 (+)
LOC110522416 NA coding upstream 64633 23768487 ~ 23772991 (+)
ccdc167 ccdc167 coding upstream 87244 23745535 ~ 23748393 (+)
nhsl1b nhsl1 coding upstream 115971 23542449 ~ 23719666 (+)
acp1 NA coding downstream 28865 23866740 ~ 23879587 (+)
LOC110522408 LOC106608020 coding downstream 187059 24024934 ~ 24034274 (+)
LOC110522407 gen1 coding downstream 214673 24052548 ~ 24060425 (+)
msgn1 LOC106608038 coding downstream 223802 24061677 ~ 24063116 (+)
si:ch211-51e12.7 NA coding downstream 225956 24063831 ~ 24072963 (+)
G334110 NA non-coding upstream 10097 23825302 ~ 23825540 (+)
G334105 NA non-coding upstream 14780 23820581 ~ 23820857 (+)
G334078 fbxo25 non-coding upstream 25877 23808854 ~ 23809760 (+)
G333528 kif25 non-coding upstream 97497 23735093 ~ 23738140 (+)
G334132 NA non-coding downstream 19680 23857555 ~ 23857813 (+)
G334133 NA non-coding downstream 21193 23859068 ~ 23859361 (+)
G334162 NA non-coding downstream 93013 23930888 ~ 23931256 (+)
G334311 NA non-coding downstream 175793 24013668 ~ 24013885 (+)
G334312 NA non-coding downstream 178862 24016737 ~ 24017204 (+)
G334116 NA other upstream 1215 23833821 ~ 23837875 (+)
G333079 smyd2 other upstream 877441 22955879 ~ 22958196 (+)
G332507 NA other upstream 1242275 22592930 ~ 22593362 (+)
G332458 LOC106584613 other upstream 1336641 22498500 ~ 22498996 (+)
G334475 NA other downstream 579707 24417582 ~ 24418946 (+)
G334473 armt1 other downstream 582239 24420114 ~ 24422731 (+)
LOC110522376 sash1 other downstream 2213178 25761890 ~ 26057813 (+)
G336464 NA other downstream 3055260 26892229 ~ 26894837 (+)
trnaa-ugc-7 NA coding upstream 282991 23550757 ~ 23550830 (+)
LOC110522308 LOC106607893 other upstream 2132207 21683716 ~ 21701617 (+)

Expression


Co-expression Network