Gene
RNA
| Item | Value |
|---|---|
| gene id | G334325 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048568.1 |
| NCBI id | CM023222.3 |
| chromosome length | 46841314 |
| location | 24051711 ~ 24052073 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| structural maintenance of chromosomes protein 6 isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU378433 | True | 227 | lncRNA | 0.45 | 2 | 24051711 | 24052073 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110522408 | LOC106608020 | coding | upstream | 17437 | 24024934 ~ 24034274 (+) |
| acp1 | NA | coding | upstream | 172124 | 23866740 ~ 23879587 (+) |
| si:ch211-225h24.2 | tdrp | coding | upstream | 250204 | 23778611 ~ 23801507 (+) |
| LOC110522416 | NA | coding | upstream | 280707 | 23768487 ~ 23772991 (+) |
| ccdc167 | ccdc167 | coding | upstream | 303318 | 23745535 ~ 23748393 (+) |
| LOC110522407 | gen1 | coding | downstream | 475 | 24052548 ~ 24060425 (+) |
| msgn1 | LOC106608038 | coding | downstream | 9604 | 24061677 ~ 24063116 (+) |
| si:ch211-51e12.7 | NA | coding | downstream | 11758 | 24063831 ~ 24072963 (+) |
| tulp4a | tulp4 | coding | downstream | 30782 | 24082855 ~ 24138549 (+) |
| tmem181 | tmem181 | coding | downstream | 86886 | 24138959 ~ 24148337 (+) |
| G334313 | cssa06h1orf115 | non-coding | upstream | 27220 | 24018489 ~ 24024491 (+) |
| G334312 | NA | non-coding | upstream | 34507 | 24016737 ~ 24017204 (+) |
| G334311 | NA | non-coding | upstream | 37826 | 24013668 ~ 24013885 (+) |
| G334162 | NA | non-coding | upstream | 120455 | 23930888 ~ 23931256 (+) |
| G334133 | NA | non-coding | upstream | 192350 | 23859068 ~ 23859361 (+) |
| G334369 | serac1 | non-coding | downstream | 103648 | 24155721 ~ 24159410 (+) |
| G334375 | NA | non-coding | downstream | 114378 | 24166451 ~ 24183626 (+) |
| G334414 | NA | non-coding | downstream | 203437 | 24255510 ~ 24256286 (+) |
| G334116 | NA | other | upstream | 217289 | 23833821 ~ 23837875 (+) |
| G333079 | smyd2 | other | upstream | 1093515 | 22955879 ~ 22958196 (+) |
| G332507 | NA | other | upstream | 1458349 | 22592930 ~ 22593362 (+) |
| G332458 | LOC106584613 | other | upstream | 1552715 | 22498500 ~ 22498996 (+) |
| G334475 | NA | other | downstream | 365509 | 24417582 ~ 24418946 (+) |
| G334473 | armt1 | other | downstream | 368041 | 24420114 ~ 24422731 (+) |
| LOC110522376 | sash1 | other | downstream | 1998980 | 25761890 ~ 26057813 (+) |
| G336464 | NA | other | downstream | 2841062 | 26892229 ~ 26894837 (+) |
