Gene
RNA
| Item | Value |
|---|---|
| gene id | G334369 |
| gene name | serac1 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048568.1 |
| NCBI id | CM023222.3 |
| chromosome length | 46841314 |
| location | 24155721 ~ 24159410 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| serac1 | Predicted to act upstream of or within phospholipid biosynthetic process. Predicted to be located in endoplasmic reticulum; membrane; and mitochondrion. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome. Orthologous to human SERAC1 (serine active site containing 1). |
| description |
|---|
| protein SERAC1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU378496 | True | 1142 | lncRNA | 0.52 | 6 | 24155721 | 24159410 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| tmem181 | tmem181 | coding | upstream | 7384 | 24138959 ~ 24148337 (+) |
| tulp4a | tulp4 | coding | upstream | 17172 | 24082855 ~ 24138549 (+) |
| si:ch211-51e12.7 | NA | coding | upstream | 82758 | 24063831 ~ 24072963 (+) |
| msgn1 | LOC106608038 | coding | upstream | 92605 | 24061677 ~ 24063116 (+) |
| LOC110522407 | gen1 | coding | upstream | 95296 | 24052548 ~ 24060425 (+) |
| syne1a | syne1 | coding | downstream | 24555 | 24183965 ~ 24396666 (+) |
| zbtb2b | zbtb2 | coding | downstream | 274725 | 24434135 ~ 24443445 (+) |
| trnal-uaa | NA | coding | downstream | 485814 | 24645224 ~ 24645306 (+) |
| utrn | LOC106608002 | coding | downstream | 488615 | 24648025 ~ 24989137 (+) |
| LOC118964455 | NA | coding | downstream | 943384 | 25102794 ~ 25104074 (+) |
| G334325 | NA | non-coding | upstream | 103648 | 24051711 ~ 24052073 (+) |
| G334313 | cssa06h1orf115 | non-coding | upstream | 131230 | 24018489 ~ 24024491 (+) |
| G334312 | NA | non-coding | upstream | 138517 | 24016737 ~ 24017204 (+) |
| G334375 | NA | non-coding | downstream | 7041 | 24166451 ~ 24183626 (+) |
| G334414 | NA | non-coding | downstream | 96100 | 24255510 ~ 24256286 (+) |
| G334417 | NA | non-coding | downstream | 106603 | 24266013 ~ 24266674 (+) |
| G334441 | NA | non-coding | downstream | 141486 | 24300896 ~ 24348001 (+) |
| G334455 | NA | non-coding | downstream | 190282 | 24349692 ~ 24350448 (+) |
| G334116 | NA | other | upstream | 321299 | 23833821 ~ 23837875 (+) |
| ccdc167 | ccdc167 | other | upstream | 407450 | 23745535 ~ 23748393 (+) |
| G333079 | smyd2 | other | upstream | 1197525 | 22955879 ~ 22958196 (+) |
| G332507 | NA | other | upstream | 1562359 | 22592930 ~ 22593362 (+) |
| G334475 | NA | other | downstream | 258172 | 24417582 ~ 24418946 (+) |
| G334473 | armt1 | other | downstream | 260704 | 24420114 ~ 24422731 (+) |
| LOC110522376 | sash1 | other | downstream | 1891643 | 25761890 ~ 26057813 (+) |
| G336464 | NA | other | downstream | 2733725 | 26892229 ~ 26894837 (+) |
| LOC110522355 | plekhg1 | other | downstream | 3016971 | 27054628 ~ 27185449 (+) |
