Gene
RNA
| Item | Value |
|---|---|
| gene id | G337165 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048568.1 |
| NCBI id | CM023222.3 |
| chromosome length | 46841314 |
| location | 25539033 ~ 25539324 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| collagen alpha-1(XI) chain |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU381692 | True | 292 | lncRNA | 0.41 | 1 | 25539033 | 25539324 |
25,536,800
25,537,200
25,537,600
25,538,000
25,538,400
25,538,800
25,539,200
25,539,600
25,540,000
25,540,400
25,540,800
25,541,200
NC_048568.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110522383 | LOC106607997 | coding | downstream | 398596 | 25135585 ~ 25140437 (-) |
| epm2a | epm2a | coding | downstream | 433478 | 25085911 ~ 25105555 (-) |
| LOC118964454 | NA | coding | downstream | 478323 | 25028611 ~ 25060710 (-) |
| LOC110522390 | NA | coding | downstream | 894669 | 24639723 ~ 24644364 (-) |
| LOC110522391 | LOC106608006 | coding | downstream | 909767 | 24624615 ~ 24629266 (-) |
| LOC110522375 | LOC106607984 | coding | upstream | 647082 | 26186406 ~ 26211003 (-) |
| cdc40 | cdc40 | coding | upstream | 743284 | 26282608 ~ 26327662 (-) |
| LOC110522371 | gpr6 | coding | upstream | 943264 | 26482588 ~ 26484715 (-) |
| fig4a | fig4 | coding | upstream | 959190 | 26498514 ~ 26603349 (-) |
| cep57l1 | cep57l1 | coding | upstream | 1141333 | 26680657 ~ 26685611 (-) |
| G337161 | NA | non-coding | downstream | 4871 | 25533881 ~ 25534162 (-) |
| G337157 | yo84 | non-coding | downstream | 8186 | 25530490 ~ 25530847 (-) |
| G337093 | NA | non-coding | downstream | 107718 | 25430919 ~ 25431315 (-) |
| G336977 | NA | non-coding | downstream | 279700 | 25259126 ~ 25259333 (-) |
| G336939 | LOC106607995 | non-coding | downstream | 340803 | 25196125 ~ 25198230 (-) |
| G337188 | NA | non-coding | upstream | 59451 | 25598775 ~ 25601072 (-) |
| G337189 | NA | non-coding | upstream | 62586 | 25601910 ~ 25602222 (-) |
| G337191 | NA | non-coding | upstream | 68318 | 25607642 ~ 25607882 (-) |
| G337205 | NA | non-coding | upstream | 92415 | 25631739 ~ 25631962 (-) |
| G337215 | NA | non-coding | upstream | 102215 | 25641539 ~ 25641861 (-) |
| G337147 | LOC106607991 | other | downstream | 26253 | 25510510 ~ 25512780 (-) |
| G334789 | NA | other | downstream | 1514530 | 24018472 ~ 24024503 (-) |
| G334252 | NA | other | downstream | 1599664 | 23938272 ~ 23939369 (-) |
| G333842 | LOC100136772 | other | downstream | 2150463 | 23387061 ~ 23388570 (-) |
| LOC110522343 | LOC106607932 | other | downstream | 2875126 | 22659885 ~ 22674233 (-) |
| G337207 | NA | other | upstream | 94393 | 25633717 ~ 25634063 (-) |
| G337894 | NA | other | upstream | 1228050 | 26767374 ~ 26770165 (-) |
| LOC110522434 | fkbp1b | other | upstream | 2191084 | 27730407 ~ 27757242 (-) |
| G339008 | NA | other | upstream | 2383125 | 27922449 ~ 27923104 (-) |
| G340468 | NA | other | upstream | 3317505 | 28856829 ~ 28857186 (-) |
