G336154


Basic Information

Item Value
gene id G336154
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 26339937 ~ 26431304 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU380533
agagaggacagaagtgtTAGGGAataatagagagtacagtagtgtgtagggataatagagagtacagtagtgtgtagggataatagagagtacagtagtgtgtagggaataatagagaggacagtagtgtgtagggataatagagagtacagtagtgtgtaggggatAATAGAgaatacagtagtgtgtaggggataatagagagtacagtagtgtgtagggaataatagagaggacagtagtgtgtagggataatagagagtacagtagtgtgtaggggataatagagagtacagtagtgtgtaggggataatagagagtacagtagtgtgtagggataatagagagtacagtagtgtgtaggggataatagagagtacagtagtgtgtagggataatagagagtacagtagtgtgtagggaataatagagagtacagtagtgtgtaggggataatagagagtacagtagtgtgtagggataatagagaggacagtagtgtgtaggggataatagagagtacagtagtgtgtaggggataatagagagtacagtagtgtgtagggataatagagagtacagtagtgtgtaggggataatagagagtacagtagtgtgtaggggataatagagaggacagtagtgtgtagggaataatagagaggacagtagtgtgtaggggataatagagagtacagtagtgtgtagggaataatagagaggacagtagtgtgtagggaataatagagaggacagtagtgtgtagggataATAGAGAATACAGTAGTGTGGAAGGAGGGT
>TU380534
cacacacacacacacacacacacacacacacacacacttggaaggaaggaaggggaagGAAGAAGGGTTGTGGAGAGTGTAGATTGTAGGATAGAGTGTCAGAGTAGGGAataatagagagtacagtagtgtgtagggataatagagagtacagtagtgtgtagggataatagagagtacagtagtgtgtagggaataatagagagtacagtagtgtgtaggggatAATAGAGAATACAGAAGTGTGTAGGGgataatagagagtacagtagtgtgtagggataatagagaatacagtagtgtgtaggggataatagagagtacagtagtgtgtagggataatagagagtacagtagtgtgtagggaataatagagaggacagtagtgtgtaggggataatagagaatacagtagtgtgtagggataatagagagtacagtagtgtgtagggaataatagagagtacagtagtgtgtagggataatagagagtacagtagtgtgtagggataatagagagtacagtagtgtgtaggggataatagagagtacagtagtgtgtaggggataatagagagtacagtagtgtgtaggggataatagagagtacagtagtgtgtagggataatagagaggacagtagtgtgtaggggataatagagaggacagtagtgtgtaggggataatagagagtacagtagtgtgtagggataatagagagtacagtagtgtgtaggggataatagagagtacagtagtgtgtagggataatagagagtacagtagtgtgtaggggataatagagaggacagtagtgtgtagggataatagagagtacagtagtgtgtagggaataatagagaggacagtagtgtgtagggaataatagagaggacagtagtgtgtaggggataatagagagtacagtagtgtgtagggaataatagagaggacagtagtgtgtagggaataatagagaggacagtagtgtgtagggataATAGAGAATACAGTAGTGTGGAAGGAGGGT
>TU380531
TAGTGTGTAGGGgataatagagagtacagtagtgtgtagggataatagagagtacagtagtgtgtaggggataatagagagtacagtagtgtgtagggataatagagagtacagtagtgtgtagggaataatagagagtacagtagtgtgtaggggataatagagagtacagtagtgtgtaggggataatagagagtacagtagtgtgtagggataatagagagtacagtagtgtgtagggataatagagaatacagtagtgtgtagggataatagagagtacagtagtgtgtagggataatagagaggacagtagtgtgtagggaataatagagaggacagtagtgtgtaggggataatagagagtacagtagtgtgtagggaataatagagaggacagtagtgtgtagggaataatagagaggacagtagtgtgtagggataATAGAGAATACAGTAGTGTGGAAGGAGGGT
>TU380532
agagagtacagtagtgtgtaggggataatagagagtacagtagtgtgtaggggataatagagagtacagtagtgtgtagggataatagagaggacagtagtgtgtagggataatagagagtacagtagtgtgtagggaataatagagaggacagtagtgtgtagggaataatagagaggacagtagtgtgtagggataATAGAGAATACAGTAGTGTGGAAGGAGGGT
>TU380527
acagtagtgtgtagggataatagagagtacagtagtgtgtaggggatAATAGAgaatacagtagtgtgtaggggataatagagagtacagtagtgtgtagggaataatagagagtacagtagtgtgtaggggatAATAGAgaatacagtagtgtgtaggggataatagagagtacagtagtgtgtagggaataatagagaggacagtagtgtgtagggataatagagagtacagtagtgtgtaggggatAATAGAgaatacagtagtgtgtagggaataatagagaggacagtagtgtgtagggaataatagagaggacagtagtgtgtagggataATAGAGAATACAGTAGTGTGGAAGGAGGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU380533 False 801 lncRNA 0.41 6 26339937 26431304
TU380534 False 1030 lncRNA 0.41 3 26426970 26431304
TU380531 False 474 lncRNA 0.41 3 26427609 26431304
TU380532 False 228 lncRNA 0.42 2 26428510 26431304
TU380527 True 366 lncRNA 0.40 2 26428689 26431304

Neighbor

gene id symbol gene type direction distance location
LOC110522374 mettl24 coding upstream 59373 26216401 ~ 26280564 (+)
LOC110522377 LOC106607986 coding upstream 162120 26059992 ~ 26177817 (+)
LOC110522376 sash1 coding upstream 282124 25761890 ~ 26057813 (+)
LOC118964400 NA coding upstream 542782 25773001 ~ 25797155 (+)
LOC110522379 LOC106607987 coding upstream 740056 25580399 ~ 25599881 (+)
ak9 ak9 coding downstream 172092 26603396 ~ 26624669 (+)
ppil6 ppil6 coding downstream 193608 26624912 ~ 26642218 (+)
LOC110522366 cd164 coding downstream 220199 26651503 ~ 26667757 (+)
sesn1 sesn1 coding downstream 254838 26686142 ~ 26756544 (+)
snx3 snx3 coding downstream 504531 26935835 ~ 26961848 (+)
G336098 NA non-coding upstream 57921 26269455 ~ 26282016 (+)
G336062 NA non-coding upstream 175743 26161680 ~ 26164194 (+)
G336055 NA non-coding upstream 189872 26149671 ~ 26150065 (+)
G336010 NA non-coding upstream 256071 26083458 ~ 26083866 (+)
G336006 NA non-coding upstream 258980 26078125 ~ 26080957 (+)
G336221 NA non-coding downstream 58404 26489708 ~ 26490154 (+)
G336234 NA non-coding downstream 71993 26503297 ~ 26503561 (+)
G336244 NA non-coding downstream 82647 26513951 ~ 26514547 (+)
G336295 NA non-coding downstream 165388 26596692 ~ 26631463 (+)
G336318 NA non-coding downstream 215211 26646515 ~ 26716267 (+)
G334473 armt1 other upstream 1917206 24420114 ~ 24422731 (+)
G334475 NA other upstream 1920991 24417582 ~ 24418946 (+)
si:ch211-51e12.7 NA other upstream 2270261 24063831 ~ 24072963 (+)
G334116 NA other upstream 2505515 23833821 ~ 23837875 (+)
G336464 NA other downstream 461831 26892229 ~ 26894837 (+)
LOC110522355 plekhg1 other downstream 745077 27054628 ~ 27185449 (+)
LOC118964415 LOC106608050 other downstream 1159548 27537262 ~ 27601564 (+)
G339660 NA other downstream 2427412 28858716 ~ 28859155 (+)
G339693 NA other downstream 2483295 28914599 ~ 28915539 (+)

Expression


Co-expression Network