G336709 (fndc1)


Basic Information

Item Value
gene id G336709
gene name fndc1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 27302672 ~ 27305939 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU381197
ccaTTTGGCTCCATCAGGCCCAGTGATGTACCTTCGTCCATTAGGTTTTGTGTTGTCATTAGGTGTGCTGGACTCTTTGTCACTGGTCACTGTGAGATTGGGGCGGCCATTTTTACCATTACCGTTTCCGTAGCCAGGCTTGAGGCCTCCACTGGGGGTTTTACCCCTGAGGAAGGGGTCTGACCGACTGGGGTAGCGCATCCTTATCCCCTGCCCCCCCAAAGAGTCtctggatgaggaggaggaggagtcctGAGACCCCTGGGATCCCTCACTAGAGGAGGTCTgtctgagggaggggagagagagggaagggggggagCCTCCAGTGCTAACACTAGTGCCCCCGTTAACCCTGTGGTCTGGCTGTGCCAgactagaggaggaagaggaagaagaggaaggggaTGTGTCTGGGTTAGAGGAATCTAACTGTGTGCTCTGTGCTGGTTGTGCTCTAAAGGGGAACCTAGAAGCCGTCTGCCTGTTTGTGAGTAGGGGGGATCTCACCCTCCCGTTGGGACCTAAAATGGGACGTCGGGGGAATGTAGAACTGGGGATCAAACCGGGTCTGGTTCTACCAAGCTTGGGGTCCACATTCTCGTTATCCCCACTCTGGGCCACCCTGCGGGGGGTACTGGGGGctgaggtagtggtagtggtggtagtggtggtagtagttttGGGGACAGGGGTTGGGTCTGTGACTTTCTCATAGATCTCCTTACTCCCCTCGTAGAGATAGTCCTCCTCATGGTCATTACTGCTGTCCTCCCTGATGCTGCTTCCTCTGTGGACTGGCTCACTGGAGTCTCTACGACCACTagaggaggggttggaggaggaagaggaggtgatgGGATTCCTAGATCCACCTAGAACTGCATTCCTGTTGGGCAGAGAGGGTTTAGGTGACCCCGCCCTCTCCCCGTTCTTTAATgggtagagggtggaggaggtTTTAGCATCTTCACTGGTCTCCTGCAATGCTGAGGTCCTCGATTCCCCTGAGGCTCCTGCTGCCCCCGTAGCTCCTGCTGCCCCTAATGCAACTGTCCTGGAGGGGGTTCCTCTAAGGAGGGGTCTCCCTGCCCCAACGGAGGACGAGGAGGTAGTCCTGCTCCAGGGAACCCTCCCGTCCGCCCGGGGGGAGGAGGCCCTGCTACTGCTCCCCGTCCCTGTTCCAAACCTGCTCTGGTGACGGTTCCCGAAGAGGTTCATCCTGGAGGGAGGGGGAGCTGGGGTGTTGTAGTTGttctcccccctcgctctctcctctctcctgtctcccctctcaccctcctctctcctgtctcccctcccttcctcctctctcctgtctcccctctcaccctcctctctcctgtctcccctcccttcctcctctctcctgtctcccctcccttcctcctctctcctgactcccctcccttcctcctctgtcctgtctcccctccctccctcctctctcctgtctcccctctcaacctcctctctcctgtcccccgtccctgtctcctctctcctgcctcccctcactctctcctctctcctgtcctctctccctctctcctctctcctgtctcccctcccttcctcctctctcctgttctctctccctctctcctccgtcccgTCCTCTCTTGCGTCCTCCTCTGAGGGATGTGTAGAGGATATGGTCTGGGAATCGGAAGTGGGTTCTTCTTCTTTTGTGgcctttgtctctgtgtttttgtAGTCGTTGTGGTCATTTTTCTCCTGGTGGTGTGTTGAGTCCTGCGCGTTAGGAGTATGTGAGCCGTGAGTGTGTGACGTTTCAGGAATCTTGCCTCCGGTCGATGTTGAGGCTGACCCAGGTTTGCGGAGTCCAGTCAGAACTCGGCCATTTGGATTCCCTCGAGACAGGATCCCGGGTTTCCTCCTGCCATAACCATATCCACGACCTGGCAGAGCAGGACCCCTACCCACAGAAGGTGCCTCGGCCTCGGGCTCTGAGATGGCCTGCtctggggtggagggggagggttTGGTTTCTGTGACACTGGGCTGGTCATAGGTGTTTTTACCCTCGGCGTAGTTGGTGACCGCATCGTCTTTCCTGATGGCTGCTGACTCCTGGCTGTGGGATGGGCTGGaggacaaagaggaggaggaggaggcactGTCCATTTCTGCATCCTGTGTCTTCGGCTGGAACACTGACCCTAAGCCTGATGTCCGGGAGAATTGCCGTCGACCAGAGTTGATGCGTCTACCGGAGAGAGGTTTGCGGAGAGGGTAGGAGGGTTTGGACGATGATGAGGAGCCCTCTGATGAGGGAACCTCTGTTTTGAGGCTGGGGCTTGAGGTCTCATCTACATCTGgatctttccctctccctctgccatggctcctgtcctcctcctcaggTTCAGAAGGAACACCGTTGTTCTGAGTCAATGcttctttcttctcctccagAGCCTCGTTGGTGAGCATCACCTTCTTCTGTTCTTCTGGATTGGGTTCTGTTGTTTTGTACTCCTCCTGCTGTTCatcctctatttctgtctctctccccttatctCTGGCTGAAGAAGTACCGCCTCCTAGTTGCTGATTGGTCGCCCCCTTCCTGACCGTGCCCCTCACATCTGAGAAGATGCTGTGATAGGAGCGTGTCTGGGTGAGTGGGCGTGTCCGTCTGGTGGCGGAGGATGTGGTCTGGGTGGGTGTGGTCAGCTGTTCGGTCACAGCATCTAATTGGAGGTCGGTGTCATCGTCATGGTAACTGTCCTGTTCGGTGGTCCGAGAAGGTGTGTGGCTGGTTCTACGGCCTCCTTGGCCCTTGGAGTGATGAGTTGGTGGGGAGGCAGCGCTGTTG

Function

symbol description
fndc1 Orthologous to human FNDC1 (fibronectin type III domain containing 1).

NR:

description
LOW QUALITY PROTEIN: fibronectin type III domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU381197 True 2863 lncRNA 0.57 5 27302672 27305939

Neighbor

gene id symbol gene type direction distance location
tcp1 tcp1 coding upstream 107321 27186465 ~ 27195351 (+)
LOC110522355 plekhg1 coding upstream 117223 27054628 ~ 27185449 (+)
LOC110522356 ostm1 coding upstream 298053 26998492 ~ 27004619 (+)
snx3 snx3 coding upstream 340824 26935835 ~ 26961848 (+)
sesn1 sesn1 coding upstream 546128 26686142 ~ 26756544 (+)
LOC110522432 otof coding downstream 96158 27402097 ~ 27524388 (+)
LOC118964415 LOC106608050 coding downstream 231323 27537262 ~ 27601564 (+)
opn8b LOC106608041 coding downstream 318761 27624700 ~ 27664419 (+)
LOC110522435 wdcp coding downstream 451494 27757433 ~ 27764552 (+)
LOC110522440 atad2b coding downstream 494984 27800923 ~ 27962367 (+)
G336705 NA non-coding upstream 4595 27296546 ~ 27298077 (+)
G336650 wtap non-coding upstream 89418 27206829 ~ 27213254 (+)
G336550 NA non-coding upstream 256979 27044702 ~ 27045693 (+)
G336519 NA non-coding upstream 324273 26978187 ~ 26978399 (+)
G336464 NA non-coding upstream 407835 26892229 ~ 26894837 (+)
G336723 NA non-coding downstream 21940 27327879 ~ 27371054 (+)
G336724 NA non-coding downstream 28185 27334124 ~ 27340999 (+)
G336725 NA non-coding downstream 28725 27334664 ~ 27336220 (+)
G336727 NA non-coding downstream 30379 27336318 ~ 27340011 (+)
G336742 NA non-coding downstream 89436 27395375 ~ 27437051 (+)
LOC110522376 sash1 other upstream 1244981 25761890 ~ 26057813 (+)
G334473 armt1 other upstream 2879941 24420114 ~ 24422731 (+)
G334475 NA other upstream 2883726 24417582 ~ 24418946 (+)
G339660 NA other downstream 1552777 28858716 ~ 28859155 (+)
G339693 NA other downstream 1608660 28914599 ~ 28915539 (+)
G339830 LOC100846954 other downstream 1860579 29166518 ~ 29166996 (+)
G339928 NA other downstream 2029430 29335369 ~ 29336939 (+)

Expression


Co-expression Network