G336723


Basic Information

Item Value
gene id G336723
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 27327879 ~ 27371054 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU381216
acacactttctacactgacacactctctctacactgacacactctctctacactgacacactctctctacacacacactttatacactgacacactctctctacactgacacactctctctacacacacactttctacactgacacactctctacactgacacactctctcgaaactgacacactctctctacactgacacactctctctacatacactctatctacactgacacactctctacactgacacaatCTCTACACGAAcagactctctacactgacacactctctacactgacacactctctacactgacagacTCTCTACACTgccactctctctacactgacattctctctacactgacacactctctacactgacacactctctacactgacacactctctacactgacactctctatacactgacacactctctacactgacacactctctacacgcactctctctacactgacacactctctacactgacacactctctacactgacacactctacactgacactctctctacactgacactctctatacactgacacactctctacactgacacactctctacacacactctctctacaatgACACattctctacactgacacactctctacacacactctctacactgacacactctctacactgaaactctctctacactgacactctctatacactaacacactctctacactgacagactctctacactgacagactctctacactgacacactctctacactgacacactctctacaccgacacactctctacactgacacactctctacactgacagacTCTCTTTaatgacacactctctacactgacacactctctacactgacactctctatactgacactctctctatactgacactcTCTCTATACTGACACAATCTCTACACGGACAGACTCTCTatactgacacactctctacactgacacactctctatactgacacactctctacactgacagacTCTCTACACTgccactctctctacactgacacactctctacactgacacactctctacactgccactttctctacactgacacaatctctacactgacatactctctccactgacacactctctacactgacactctctacactgacattctctctacaccgacacactctctgCACTGAcagactctctacactgacacactctctctccactgacacactctacacacactctctctacactgacacactctctacactgacacactctctacactgacacactatctacactgacacactctctacactgacacactctctacactgccactttctctacactgacacactctctacactgacactctctacactgacattctctctacaccgacacactctctgcactgacacactctctaccctgacacactctctacaccgacacactctctaaactgacacactctctctacac
>TU381220
acacactttctacactgacacactctctctacactgacacactctctctacactgacacactctctctacacacacactttatacactgacacactctctctacactgacacactctctctacacacacactttctacactgacacactctctacactgacacactctctcgaaactgacacactctctctacactgacacactctctctacatacactctatctacactgacacactctctacactgacacaatCTCTACACGAAcagactctctacactgacacactctctacactgacacactctctacactgacagacTCTCTACACTgccactctctctacactgacattctctctacactgacacactctctacactgacacactctctacactgacacactctctacactgacactctctatacactgacacactctctacactgacacactctctacacgcactctctctacactgacacactctctacactgacacactctctacactgacacactctacactgacactctctctacactgacactctctatacactgacacacTCTCTACACTGACACAATCTCTACACGAAcagactctctacactgacacactctctacattgacacactctctacactgacaccctctctacacacactctctctacactgacaccctctctacacacactctctctacactgacacacactctcacacactctctctacactgacacactctctacacacactctctctacactgacacactctctacactgacactctctctacactgacaccctctctacacacactctctctacactgacacaccccctctacactgacacactctctctacaatgacacactctctacactgacactctctctacactgacacactctctctacactgacacactctctctacactgacacactctctacactgacacactctctacactgacacactctctctacaccgacactctctctacactgacacactctctacacacactctttacactgacacactctctacactgacagactctctacactgacacactctctacaccgacacactctctacactgacacactctctacaccgacacactctctacaccgacacactctctacactgacacactctctctacactgacacactctacaccgacacactctctacactgacacactctctacactgaaacactctctacaccgacacactctctacactgacacactctctacactgacactctctctacactgacactctctctacaccgacacactctctacactgacacactctctctacactgacacactctctacaccgacacactctctacactgacacactctctacactgacacactctctacaccgacacactctctacaccgacacactctctacaccgacacactctctacaccgacacactctctacaccgacacactctctacactgccactctctctacactgacacactctctgcactgacacactctctacactgccaatctctctacactgacacactctctacactgacacactctctacactgacagactctctacactgacacactctctacactgacactctctctacactgacactctctctacaccgacacactctctacactgacaga
>TU381225
acacactttctacactgacacactctctctacactgacacactctctctacactgacacactctctctacacacacactttatacactgacacactctctctacactgacacactctctctacacacacactttctacactgacacactctctacactgacacactctctcgaaactgacacactctctctacactgacacactctctctacatacactctatctacactgacacactctctacactgacacaatCTCTACACGAAcagactctctacactgacacactctctacactgacacactctctacactgacagacTCTCTACACTgccactctctctacactgacattctctctacactgacacactctctacactgacacactctctacactgacacactctctacactgacactctctatacactgacacactctctacactgacacactctctacacgcactctctctacactgacacactctctacactgacacactctctacactgacacactctacactgacactctctctacactgacactctctatacactgacacacTCTCTACACTGACACAATCTCTACACGAAcagactctctacactgacacactctctacattgacacactctctacactgacaccctctctacacacactctctctacactgacaccctctctacacacactctctctacactgacacacactctcacacactctctctacactgacacactctctacacacactctctctacactgacacactctctacactgacactctctctacactgacaccctctctacacacactctctctacactgacacaccccctctacactgacacactctctctacaatgacacactctctacactgacactctctctacactgacacactctctctacactgacacactctctctacactgacacactctctacactgacacactctctacactgacacactctctctacaccgacactctctctacactgacacactctctacacacactctttacactgacacactctctacactgacagactctctacactgacacactctctacaccgacacactctctacactgacacactctctacaccgacacactctctacaccgacacactctctacactgacacactctctctacactgacacactctacaccgacacactctctacactgacacactctctacactgaaacactctctacaccgacacactctctacactgacacactctctacactgacactctctctacactgacactctctctacaccgacacactctctacactgacacactctctctacactgacacactctctacaccgacacactctctacactgacacactctctacactgacactctctctatactgacactcTCTCTATACTGACACAATCTCTACACGGACAGACTCTCTatactgacacactctctacactgacacactctctatactgacacactctctacactgacagacTCTCTACACTgccactctctctacactgacacactctctacactgacacactctctacactgccactttctctacactgacacaatctctacactgacatactctctccactgacacactctctacactgacactctctacactgacattctctctacaccgacacactctctgCACTGAcagactctctacactgacacactctctctccactgacacactctacacacactctctctacactgacacactctctacactgacacactctctacactgacacactatctacactgacacactctctacactgacacactctctacactgccactttctctacactgacacactctctacactgacactctctacactgacattctctctacaccgacacactctctgcactgacacactctctaccctgacacactctctacactgacacactctctacaccgacacactctctacactgacacactctctctacactgacacactctctacaccgacacactctctacaccgacacactctctacactgacacaccctcta
>TU381223
tCTCTACACTGAAACACTCTCTACACcaacacactctctacactgaaacACTCTCTACaacgacacactctctacaccaacacactatctacactgacacactctctacactgacacactctctacactgacactctctctacactgacactctctctacaccgacacactctctacactgacacactctctctacactgacacactctctacaccgacacactctctacactgacacactctctacactgacactctctctatactgacactcTCTCTATACTGACACAATCTCTACACGGACAGACTCTCTatactgacacactctctacactgacacactctctacactgacacactctctacactgccactttctctacactgacacactctctacactgacagacTCTctccactgacacactctctacactgacactctctacactgacattctctctacaccgacacactctctacaccgacacactctctacactg
>TU381224
ctctctacactgacacactctctacacacactctctctacactgacacactctacactgacacactctctacactgacacactctctacactgacactctctacatttacacactctctacactgacacactctctacacacacactctctacactgacacactctacactgacacactctctacactgacaaactctctacactgacacactctctacatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU381216 False 1505 lncRNA 0.46 4 27327879 27333502
TU381220 False 1708 lncRNA 0.48 4 27327879 27331504
TU381225 False 2102 lncRNA 0.47 8 27327879 27346073
TU381223 False 504 lncRNA 0.47 2 27330960 27332881
TU381224 True 222 lncRNA 0.45 3 27349659 27371054

Neighbor

gene id symbol gene type direction distance location
tcp1 tcp1 coding upstream 132528 27186465 ~ 27195351 (+)
LOC110522355 plekhg1 coding upstream 142430 27054628 ~ 27185449 (+)
LOC110522356 ostm1 coding upstream 323260 26998492 ~ 27004619 (+)
snx3 snx3 coding upstream 366031 26935835 ~ 26961848 (+)
sesn1 sesn1 coding upstream 571335 26686142 ~ 26756544 (+)
LOC110522432 otof coding downstream 31043 27402097 ~ 27524388 (+)
LOC118964415 LOC106608050 coding downstream 166208 27537262 ~ 27601564 (+)
opn8b LOC106608041 coding downstream 253646 27624700 ~ 27664419 (+)
LOC110522435 wdcp coding downstream 386379 27757433 ~ 27764552 (+)
LOC110522440 atad2b coding downstream 429869 27800923 ~ 27962367 (+)
G336709 fndc1 non-coding upstream 21940 27302672 ~ 27305939 (+)
G336705 NA non-coding upstream 29802 27296546 ~ 27298077 (+)
G336650 wtap non-coding upstream 114625 27206829 ~ 27213254 (+)
G336550 NA non-coding upstream 282186 27044702 ~ 27045693 (+)
G336519 NA non-coding upstream 349480 26978187 ~ 26978399 (+)
G336742 NA non-coding downstream 24321 27395375 ~ 27437051 (+)
G336777 NA non-coding downstream 80464 27451518 ~ 27454337 (+)
G338328 NA non-coding downstream 230677 27601731 ~ 27602437 (+)
G338358 NA non-coding downstream 252321 27623375 ~ 27623670 (+)
G338363 NA non-coding downstream 254489 27625543 ~ 27625857 (+)
G336464 NA other upstream 433042 26892229 ~ 26894837 (+)
LOC110522376 sash1 other upstream 1270188 25761890 ~ 26057813 (+)
G334473 armt1 other upstream 2905148 24420114 ~ 24422731 (+)
G334475 NA other upstream 2908933 24417582 ~ 24418946 (+)
G339660 NA other downstream 1487662 28858716 ~ 28859155 (+)
G339693 NA other downstream 1543545 28914599 ~ 28915539 (+)
G339830 LOC100846954 other downstream 1795464 29166518 ~ 29166996 (+)
G339928 NA other downstream 1964315 29335369 ~ 29336939 (+)

Expression

G336723 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
End of interactive chart.

G336723 Expression in each Bioproject

Bar chart with 17 bars.
G336723 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network