G336727


Basic Information

Item Value
gene id G336727
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 27336318 ~ 27340011 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU381234
cactgccactttctctacactgacacactctctacactgacatactctctccactgacacactctctacactgacactctctacactgacattctctctacaccgacacactctctgCACTGACaaactctctacactgacacactctctctccactgacacaccctacacacactctctctacactgacacactctctacactgacacactctctacactgacacactctctacactgacacactctctacactgacactctctatacactgacacactctctacactgacacactctctacactgaaactctctacactgacactctctctacactgacacaatCTATACACGGAcagactctctacactgacacactctctacactgacacactctctacactgacagactctctacactgacacactctctctacactgacacactctctctacaccaacacactctctacactgacacactctctacactgacaaaaTCTCTACACTGACagactctctctacactgacatactctctacactgacacagtttctacactgacacactctctacactgacacactctctacactgacacactctctacattgacaagctctctacactgacacactctctacattgacacactctctacattgacacactctctacactgacactctctctacactgacactctctctacactgacaccctctctacactgacacactctctacaccgacacactctctacaccgacacactctctacactgacacactctctcttcactgacacactctctacaccgacacactctctacactgacacactctctctacactgacacactctctacaccgacacactctctacactgacaaactctctacactgacacactctctacaccgacacactctctacaccgacacactctctacaccgacacactctctacactgacacactctctacactgacacactctctacactgacacactctctacactgacactctctctacactgacacactctctacattgacacactctctacactgacactccctctacactgacacactctacactgatacactctctacactgacacactctctacactgacacacactctcacacactctctctaaactgacacactctctacacacactctctctacactgacacactctctacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU381234 True 1224 lncRNA 0.47 2 27336318 27340011

Neighbor

gene id symbol gene type direction distance location
tcp1 tcp1 coding upstream 140967 27186465 ~ 27195351 (+)
LOC110522355 plekhg1 coding upstream 150869 27054628 ~ 27185449 (+)
LOC110522356 ostm1 coding upstream 331699 26998492 ~ 27004619 (+)
snx3 snx3 coding upstream 374470 26935835 ~ 26961848 (+)
sesn1 sesn1 coding upstream 579774 26686142 ~ 26756544 (+)
LOC110522432 otof coding downstream 62086 27402097 ~ 27524388 (+)
LOC118964415 LOC106608050 coding downstream 197251 27537262 ~ 27601564 (+)
opn8b LOC106608041 coding downstream 284689 27624700 ~ 27664419 (+)
LOC110522435 wdcp coding downstream 417422 27757433 ~ 27764552 (+)
LOC110522440 atad2b coding downstream 460912 27800923 ~ 27962367 (+)
G336725 NA non-coding upstream 98 27334664 ~ 27336220 (+)
G336709 fndc1 non-coding upstream 30379 27302672 ~ 27305939 (+)
G336705 NA non-coding upstream 38241 27296546 ~ 27298077 (+)
G336650 wtap non-coding upstream 123064 27206829 ~ 27213254 (+)
G336550 NA non-coding upstream 290625 27044702 ~ 27045693 (+)
G336742 NA non-coding downstream 55364 27395375 ~ 27437051 (+)
G336777 NA non-coding downstream 111507 27451518 ~ 27454337 (+)
G338328 NA non-coding downstream 261720 27601731 ~ 27602437 (+)
G338358 NA non-coding downstream 283364 27623375 ~ 27623670 (+)
G338363 NA non-coding downstream 285532 27625543 ~ 27625857 (+)
G336464 NA other upstream 441481 26892229 ~ 26894837 (+)
LOC110522376 sash1 other upstream 1278627 25761890 ~ 26057813 (+)
G334473 armt1 other upstream 2913587 24420114 ~ 24422731 (+)
G334475 NA other upstream 2917372 24417582 ~ 24418946 (+)
G339660 NA other downstream 1518705 28858716 ~ 28859155 (+)
G339693 NA other downstream 1574588 28914599 ~ 28915539 (+)
G339830 LOC100846954 other downstream 1826507 29166518 ~ 29166996 (+)
G339928 NA other downstream 1995358 29335369 ~ 29336939 (+)

Expression


Co-expression Network