G338379


Basic Information

Item Value
gene id G338379
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 27640485 ~ 27640826 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU383001
atctaattgcattctaaactgaagatcatgattaggtgattattggagtcaggtgtgttagctggggcaaaactgacaccaatcaggccctcgaggactggaattgcccaccccttATCTAGACAATATTATGGCTTATTCGCtagaaaatatgtttattttgataATGGTTCAACATTCACAAATAACTTTTTTTATATTGAACAAAATACTAAAGTAAAAAATCTATCCAAAATAAACTGACATGCACAAACAGAAACAATACACtgcaaaaacaaaacacacaaaaacatgcCTGCTCTTgcccacaatcacacacaaaaacacaaacgCGACATGTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU383001 True 342 lncRNA 0.36 1 27640485 27640826

Neighbor

gene id symbol gene type direction distance location
LOC118964415 LOC106608050 coding upstream 38921 27537262 ~ 27601564 (+)
LOC110522432 otof coding upstream 116097 27402097 ~ 27524388 (+)
tcp1 tcp1 coding upstream 445134 27186465 ~ 27195351 (+)
LOC110522355 plekhg1 coding upstream 455036 27054628 ~ 27185449 (+)
LOC110522356 ostm1 coding upstream 635866 26998492 ~ 27004619 (+)
LOC110522435 wdcp coding downstream 116607 27757433 ~ 27764552 (+)
LOC110522440 atad2b coding downstream 160097 27800923 ~ 27962367 (+)
LOC118964460 NA coding downstream 230317 27871143 ~ 27872978 (+)
LOC110522445 LOC106608054 coding downstream 917374 28558200 ~ 28567300 (+)
LOC110522446 bmp2 coding downstream 989178 28630004 ~ 28636513 (+)
G338363 NA non-coding upstream 14628 27625543 ~ 27625857 (+)
G338358 NA non-coding upstream 16815 27623375 ~ 27623670 (+)
G338328 NA non-coding upstream 38048 27601731 ~ 27602437 (+)
G336777 NA non-coding upstream 186148 27451518 ~ 27454337 (+)
G336742 NA non-coding upstream 203434 27395375 ~ 27437051 (+)
G338383 NA non-coding downstream 7221 27648047 ~ 27648268 (+)
opn8b LOC106608041 non-coding downstream 22479 27624700 ~ 27664419 (+)
G338376 NA non-coding downstream 24637 27665463 ~ 27665851 (+)
G338426 NA non-coding downstream 40381 27681207 ~ 27681450 (+)
G338448 NA non-coding downstream 65294 27706120 ~ 27709081 (+)
G336464 NA other upstream 745648 26892229 ~ 26894837 (+)
LOC110522376 sash1 other upstream 1582794 25761890 ~ 26057813 (+)
G334473 armt1 other upstream 3217754 24420114 ~ 24422731 (+)
G339660 NA other downstream 1217890 28858716 ~ 28859155 (+)
G339693 NA other downstream 1273773 28914599 ~ 28915539 (+)
G339830 LOC100846954 other downstream 1525692 29166518 ~ 29166996 (+)
G339928 NA other downstream 1694543 29335369 ~ 29336939 (+)
G342538 NA other downstream 3741000 31381826 ~ 31382749 (+)

Expression


Co-expression Network