G338383


Basic Information

Item Value
gene id G338383
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 27648047 ~ 27648268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU383005
tcaaacctatagacaatttgtgggcagaactgaaaaccgtgtgggtgcgagcaaggaggcctacaaacctgactcagttacaccagctctgttggaggaatgggccaaaattcacccaacttattgtagaagcttgtggaaggcttcccggaacatttgacccaagttaaacaatttgaaggcaatgctaccaaatactaattgagtgtatgtaaacttctg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU383005 True 222 lncRNA 0.44 1 27648047 27648268

Neighbor

gene id symbol gene type direction distance location
LOC118964415 LOC106608050 coding upstream 46483 27537262 ~ 27601564 (+)
LOC110522432 otof coding upstream 123659 27402097 ~ 27524388 (+)
tcp1 tcp1 coding upstream 452696 27186465 ~ 27195351 (+)
LOC110522355 plekhg1 coding upstream 462598 27054628 ~ 27185449 (+)
LOC110522356 ostm1 coding upstream 643428 26998492 ~ 27004619 (+)
LOC110522435 wdcp coding downstream 109165 27757433 ~ 27764552 (+)
LOC110522440 atad2b coding downstream 152655 27800923 ~ 27962367 (+)
LOC118964460 NA coding downstream 222875 27871143 ~ 27872978 (+)
LOC110522445 LOC106608054 coding downstream 909932 28558200 ~ 28567300 (+)
LOC110522446 bmp2 coding downstream 981736 28630004 ~ 28636513 (+)
G338379 NA non-coding upstream 7221 27640485 ~ 27640826 (+)
G338363 NA non-coding upstream 22190 27625543 ~ 27625857 (+)
G338358 NA non-coding upstream 24377 27623375 ~ 27623670 (+)
G338328 NA non-coding upstream 45610 27601731 ~ 27602437 (+)
G336777 NA non-coding upstream 193710 27451518 ~ 27454337 (+)
opn8b LOC106608041 non-coding downstream 15037 27624700 ~ 27664419 (+)
G338376 NA non-coding downstream 17195 27665463 ~ 27665851 (+)
G338426 NA non-coding downstream 32939 27681207 ~ 27681450 (+)
G338448 NA non-coding downstream 57852 27706120 ~ 27709081 (+)
G338468 NA non-coding downstream 82143 27730411 ~ 27731682 (+)
G336464 NA other upstream 753210 26892229 ~ 26894837 (+)
LOC110522376 sash1 other upstream 1590356 25761890 ~ 26057813 (+)
G334473 armt1 other upstream 3225316 24420114 ~ 24422731 (+)
G339660 NA other downstream 1210448 28858716 ~ 28859155 (+)
G339693 NA other downstream 1266331 28914599 ~ 28915539 (+)
G339830 LOC100846954 other downstream 1518250 29166518 ~ 29166996 (+)
G339928 NA other downstream 1687101 29335369 ~ 29336939 (+)
G342538 NA other downstream 3733558 31381826 ~ 31382749 (+)

Expression


Co-expression Network