G338564 (klhl29)


Basic Information

Item Value
gene id G338564
gene name klhl29
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 28010919 ~ 28035031 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU383195
ctgCAGATAGCCGTGGTCGTGTCCTAGGAGTCTGCATCTCCTGTCTGGCGTGAGGTAACATGTGATACCTCTTGGCTTCGTTGACTAGGTCTCGACACGCCTCTGACGTCTTTATTAAGTCCTCGTTATCCACAACGTTCAGCAGGTAAGAGGGGTGAATGAAGGGAAGACGAACCACCGCTAACAACTCTGACACAtgCTGAACTCTGGCGGTGGGGTCTTGTTTGATCCACTTGATGGCGGTCTCATAGACCAGTTCCTCAGCCTTGGTGGTGAGGCTGTCATTAGAGAGGTAGGCCACTAGGTCCTCCTTAGACACACACAGAATCTCCTCCTGCCCCGCCACCTCAGGGAAGTTCTGCAGTGCAAAAGCTTTGGCCATGTTGTGGAGCTCTGTACATCGCATAGCTTCAGCCATGGCCAGCACACCTAGACAGTTCCCCACTGTTAGCTGTTTCTCTAGGAAGGACACACAGACTCTGCAGAAGGTGTTGAATTGGAACTTGTTGGCAGCTTCTAGCAGTGTCCTGGCGTTAGCGGAGTCTATGACCAGAGAACCTGTGTAGACAAACTCCAGCAGCAGCTCCAACACATCAGCTCCAATGTCATTCATCCGCAGCTCTAGCATCTCCCCGCTCCTCGTCTCCCCTGACGACCTGACCAACCAACCACGGTAGAGACAGGAGTTAGACATCGAAGAGATGCGCACACACCTAGGACtagggctacacacacacacacacacacacacaagcacacacacacacacacaacctgcatCAATAGAATAGGGAAAAATAACAGAATCAATACAACACgatagaatacagtagaaatGGGGAAGGTAGAGATTCTGTTTGTTCttgtttttacagtaagccaCTAGGGTTTGTAACAGTACATAGTTAGGGTTGTGCTCCATCTGAAACAAAAGCACAAGTGATTGGTGTCTTTATCAAGGCAAATTAATATCCAAAAGGCATGCTTTGACATGTGTTCAGGTATGCATAGATATTAAGGACATGCATACAGGATAGTGggagacagaagacagaggggaggagctTATAAAACCACACAGAAGATCCCTAGGTATGTTAGAACAGTGTTGAAACAGACTGCTAACGGATGATCTCAAGCTATGTTAGCTGTGGTATGTTTGAAAGCTAGCCAACTGTTGCACCCAATACTACTACTCTGTATTGCTATCCTGTGTGTTGTATATCAGAACTACATGCTGAGGTGCTGGGTGGCTTGTATGGGCATTGCAACAGAATGGGATATCTGTGATTAGTTGAAGTTCTGGAACTTTCCGGGGGTTTAAAGAAGCGTTAAGTAACGCATCAAAACCCACGTTTAATGTCCCATGTGCACAACAATCTAGTCACGGGTAAAATAAACAGATCCAATGCCCCAAAATAAAGTGAGATATTGTGTCCCTCCCCCGAGAGCTGTGGACAAACAATATGACAACTACCAAGGATTGAGATGGATGGGGTGTGTTCTCCTGCTGGTCACACTGCATAATGCTCTGTGTCTGTTTCAAGTGTTAATGTCTCCTACTGGGTTGGTGAGAGACTCAAAGAGAAGCCTTTACAGAGCATACACTCAGTCATAGTGGTTGATGCGAGatgcagacagacggacacacagaCGGACATATGGGCAGAATGGTTAGAGtgaagaggaaagagggagagagcgaggatgGAAG

Function

symbol description
klhl29 Orthologous to human KLHL29 (kelch like family member 29).

NR:

description
kelch-like protein 29 isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU383195 True 1714 lncRNA 0.47 4 28010919 28035031

Neighbor

gene id symbol gene type direction distance location
LOC110522440 atad2b coding upstream 48552 27800923 ~ 27962367 (+)
LOC118964460 NA coding upstream 137941 27871143 ~ 27872978 (+)
LOC110522435 wdcp coding upstream 246367 27757433 ~ 27764552 (+)
opn8b LOC106608041 coding upstream 346500 27624700 ~ 27664419 (+)
LOC118964415 LOC106608050 coding upstream 409355 27537262 ~ 27601564 (+)
LOC110522445 LOC106608054 coding downstream 523169 28558200 ~ 28567300 (+)
LOC110522446 bmp2 coding downstream 594973 28630004 ~ 28636513 (+)
LOC110521072 plcb1 coding downstream 664036 28699067 ~ 28934753 (+)
LOC110522448 plcb4 coding downstream 923053 28958084 ~ 29140138 (+)
LOC110522450 LOC106608065 coding downstream 1118443 29153474 ~ 29163882 (+)
G338504 NA non-coding upstream 46517 27962713 ~ 27964402 (+)
G338570 NA non-coding upstream 52170 27957453 ~ 27958749 (+)
G338569 NA non-coding upstream 56506 27954159 ~ 27954413 (+)
G338568 NA non-coding upstream 56932 27953688 ~ 27953987 (+)
G338724 NA non-coding downstream 165387 28200418 ~ 28201053 (+)
G338731 NA non-coding downstream 173366 28208397 ~ 28211502 (+)
G338732 NA non-coding downstream 173933 28208964 ~ 28212157 (+)
G338813 NA non-coding downstream 303002 28338033 ~ 28354687 (+)
G339254 NA non-coding downstream 350574 28385605 ~ 28385890 (+)
LOC110522355 plekhg1 other upstream 825949 27054628 ~ 27185449 (+)
G336464 NA other upstream 1116082 26892229 ~ 26894837 (+)
LOC110522376 sash1 other upstream 1953228 25761890 ~ 26057813 (+)
G334473 armt1 other upstream 3588188 24420114 ~ 24422731 (+)
G339660 NA other downstream 823685 28858716 ~ 28859155 (+)
G339693 NA other downstream 879568 28914599 ~ 28915539 (+)
G339830 LOC100846954 other downstream 1131487 29166518 ~ 29166996 (+)
G339928 NA other downstream 1300338 29335369 ~ 29336939 (+)
G342538 NA other downstream 3346795 31381826 ~ 31382749 (+)

Expression


Co-expression Network