G339670


Basic Information

Item Value
gene id G339670
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 28874572 ~ 28874791 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU384417
ctgttctgtttaccctacctgcactcacctgttctgtctaccctaccagcactcacccgttctgtctaccctacctgcactcacctgttctgtctaccctacctgcactcacctgttctgtctaccctacctgcactcacctgttctgtctaccctacctgcactcacctgttctgtctaccctaccaggACTCAcgtgttctgtctaccctacctgcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384417 True 220 lncRNA 0.54 1 28874572 28874791

Neighbor

gene id symbol gene type direction distance location
LOC110522446 bmp2 coding upstream 238059 28630004 ~ 28636513 (+)
LOC110522445 LOC106608054 coding upstream 307272 28558200 ~ 28567300 (+)
LOC110522440 atad2b coding upstream 912205 27800923 ~ 27962367 (+)
LOC118964460 NA coding upstream 1001594 27871143 ~ 27872978 (+)
LOC110522435 wdcp coding upstream 1110020 27757433 ~ 27764552 (+)
LOC110522448 plcb4 coding downstream 83293 28958084 ~ 29140138 (+)
LOC110522450 LOC106608065 coding downstream 278683 29153474 ~ 29163882 (+)
LOC118964462 NA coding downstream 300535 29174963 ~ 29176894 (+)
LOC118964461 NA coding downstream 308088 29182879 ~ 29186037 (+)
LOC110522451 LOC106608077 coding downstream 464745 29339536 ~ 29348164 (+)
G339669 NA non-coding upstream 5035 28869322 ~ 28869537 (+)
G339668 NA non-coding upstream 6327 28867926 ~ 28868245 (+)
G339666 NA non-coding upstream 9642 28864567 ~ 28864930 (+)
G339662 NA non-coding upstream 13505 28859944 ~ 28861067 (+)
G339649 NA non-coding upstream 41167 28833139 ~ 28833405 (+)
G339671 NA non-coding downstream 692 28875483 ~ 28875691 (+)
G339674 NA non-coding downstream 5432 28880223 ~ 28880458 (+)
G339693 NA non-coding downstream 39808 28914599 ~ 28915539 (+)
G339694 NA non-coding downstream 41499 28916290 ~ 28917570 (+)
G339578 NA non-coding downstream 60397 28935188 ~ 28936178 (+)
G339660 NA other upstream 15417 28858716 ~ 28859155 (+)
LOC118964415 LOC106608050 other upstream 1273016 27537262 ~ 27601564 (+)
LOC110522355 plekhg1 other upstream 1689602 27054628 ~ 27185449 (+)
G336464 NA other upstream 1979735 26892229 ~ 26894837 (+)
LOC110522376 sash1 other upstream 2816881 25761890 ~ 26057813 (+)
G339830 LOC100846954 other downstream 291727 29166518 ~ 29166996 (+)
G339928 NA other downstream 460578 29335369 ~ 29336939 (+)
G342538 NA other downstream 2507035 31381826 ~ 31382749 (+)
LOC110522493 LOC106608104 other downstream 2543164 31417955 ~ 31422086 (+)

Expression


Co-expression Network