G339577


Basic Information

Item Value
gene id G339577
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 28936324 ~ 28939133 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU384309
gatgaggaTAAAGGGATGGAAGAAAGAGTAAATCTTGTTCTTTACCAATTGTACATGTTAGCAGAAAATACATAACATAAATGTAAAATTAACTCAAACTgaaactgcaaaaatgttactatGGATGAGATTACATTGTTTGTACAGTACAAGTGATAAACTACAGGTGTTGATATGAGATGAAAAGCAACATGACTATATCAATGCCCCTTACCAATGACTGAaattgtaaacacacacacacacacacacacacacacacttgacccATTAACAGAAGACACTAAAATGATGTCCCAGTCCTTTCACCTGTTGGAGTGGTTACTACATTACATTTAGACCCTAGACACAGTTTTGTGATCACACGTCTACAGGCATACATGTCCCAACTGTTTATTCAATGGTTTTACTCCTTCTTTGGCAAGTAATTCCTGCCTAAGACAGCTACCACAGATATAGTTTGCAACATGGGAGTGGTAGATTTTAATTTCTAAATCAAACCATTGAAGGTAATTTCATGTCTGTGTAAAATATTGAGATCACCACCCTTTACGGGATCTTGAACACTATTGGTCCATACCTCTTTTGATATGTGACGTCATACTTAACTAAACTGTCAATCAAAGACCCATATGATGTTTTTTAGTTTCCAATCTGTACAGTACCATACATACACCACATGTATCATGTCTGATATTGGAAAACTTATTTCAATtgattaaaggtccaatgcagccgtttttatctcaatatcaaatcaattctgggtaacaattaaatagctaactgtaattgtttttaataaaaaatTGTCAAcaagaaacaaaaatgtattattaGTAAAaataatttctcaagcaagaattttgctaggaccttctgggagtggtctgagtggggaggggaaaactgactaacttttattggcagagagttttggaactctttcttattggtctattaactaatttaacacctggtgatgtcaccaggcagaccaaaactccatcccactaaAAACGGCTctttagtgctgagcgattaaccaagATTTTATTTTTGGTTATTAAACAACTGATTGACCAACGTGccgtttctctagagagaaatcagAGAAATCAAGTCGAGCTATGTGGGAcgctgggctgaagggagttgtagttttcattaaGCAAATATTCGACCTAGTTCAGCGCAgaaatgtggtaattaactacaataacCACAATCTATTGCGACAGTTTTTCCCGGCTCGAGGCGGAtcagaggaagaggcgaagcgagaggtttcactctcaCCTAAATCTGCCCAAGATAAACCCAATGCGTTTcaatgggcttattttggacttgtataaataaaggttcatatttttttattcatttttaaaaGCTTGtttcccgcctttgggacaacgactcccattgtttgggcatagacatgagcatctcgtcattgtATACAGATCTCTGAACGGATACACTTTTACGCCTGCTATATTAGGTTAGATGCACACAGAACGCATAAGACGGTATGAGAGAGGAATGTGCATAACATAACAATGAGAGGGTCAGGGACAGTTTGTGAAAGTATAGCTTATCTACTTTTAAGAACTAATACAATGATGTTGTCAGTCAGCTCTGCAGCATACTGTACTTAGCcaggctagctaaataggatgactacagacagtacagtatggggagcACATAACGTTAGAtggcctggctggctgactgctactGCCTGAACTGAGATGATTACTTTAAGGACTGAAAAATAATAAAGTCATTAAATAAAAAACtaagtaatatacacaactgaataTTTTATTATGTCATAGTAATTTCCTATAATTCTGATGTTCGATGTGGAtctgacagagacaatggaatatGTTCAATGCTTTGGCAACTGAATGTTCACTATTTTAGGTTTTAGAATGTCCATTAAAAAGCCCTAAGTCATTATTTATAATACAtttcatgtttaaaaaaataatcgaAACCGAAATCAAAAAACGTGATTCTTTTTTTATAATGGAAACcgaaccaacctcaaaaagcactaatcactcagcactacagctgttacactaaaagggcattatcatcattttcacagtttcacagtattattccaacctcatagtgtggaaatataaatAAAAGACAGAACGATgtagtttttgactgcactgggccttgaATCATTTTAAAGTGAAGAACCACATTATAAAGTAACACTACTGAGTAAAAAAACACTCGTGATAATGAACAGTATTTTGAGAAGTATCTCCTAAAAAAGACAACAATGCTagacatgtatttttattttgtcgTGAACCACCTTAACAGTTTCTGTTCATCAACTTGTGTTTGCATTTTGTTGTAAATGTGTGTATGATGTAAAGGCAAAACATTGAAACGAAGAtgacagggatgatgatggtgatgatcgtagtagagtagtgtaaagGTAATCTGCTTGTAATTAATAAATGTGGCTATAATTGTACATTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384309 True 2524 lncRNA 0.36 5 28936324 28939133

Neighbor

gene id symbol gene type direction distance location
LOC110521072 plcb1 coding upstream 1571 28699067 ~ 28934753 (+)
LOC110522446 bmp2 coding upstream 299811 28630004 ~ 28636513 (+)
LOC110522445 LOC106608054 coding upstream 369024 28558200 ~ 28567300 (+)
LOC110522440 atad2b coding upstream 973957 27800923 ~ 27962367 (+)
LOC110522448 plcb4 coding downstream 18951 28958084 ~ 29140138 (+)
LOC110522450 LOC106608065 coding downstream 214341 29153474 ~ 29163882 (+)
LOC118964462 NA coding downstream 236193 29174963 ~ 29176894 (+)
LOC118964461 NA coding downstream 243746 29182879 ~ 29186037 (+)
LOC110522451 LOC106608077 coding downstream 400403 29339536 ~ 29348164 (+)
G339578 NA non-coding upstream 146 28935188 ~ 28936178 (+)
G339694 NA non-coding upstream 18754 28916290 ~ 28917570 (+)
G339693 NA non-coding upstream 21261 28914599 ~ 28915539 (+)
G339674 NA non-coding upstream 55866 28880223 ~ 28880458 (+)
G339671 NA non-coding upstream 60633 28875483 ~ 28875691 (+)
G339747 NA non-coding downstream 40646 28979779 ~ 28980504 (+)
G339767 NA non-coding downstream 59822 28998955 ~ 29001114 (+)
G339781 NA non-coding downstream 77336 29016469 ~ 29023453 (+)
G339721 NA non-coding downstream 202874 29142007 ~ 29142351 (+)
G339719 NA non-coding downstream 203858 29142991 ~ 29146900 (+)
G339660 NA other upstream 77169 28858716 ~ 28859155 (+)
LOC118964415 LOC106608050 other upstream 1334768 27537262 ~ 27601564 (+)
LOC110522355 plekhg1 other upstream 1751354 27054628 ~ 27185449 (+)
G336464 NA other upstream 2041487 26892229 ~ 26894837 (+)
G339830 LOC100846954 other downstream 227385 29166518 ~ 29166996 (+)
G339928 NA other downstream 396236 29335369 ~ 29336939 (+)
G342538 NA other downstream 2442693 31381826 ~ 31382749 (+)
LOC110522493 LOC106608104 other downstream 2478822 31417955 ~ 31422086 (+)
G342571 NA other downstream 2512000 31451133 ~ 31451476 (+)

Expression


Co-expression Network