G339781


Basic Information

Item Value
gene id G339781
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29016469 ~ 29023453 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU384572
gtgtgtgttagtctgctgtgagtgtgtgttagtctgctgtgagtgtgtgtgttagtctgctgtgagtgtgtgtgttagtctgctgtgagtgtgtgtgttagtctgctgtgagtgtgtgtgtcagtctgctgtgagagtgtgttagtctgctgtgtgagtgtgttagtctgctgtgagtgtgtgtgttagtctgctgtgagtgtgtgttagtttgctgtgagtgtgtgtgttagtctgctgtgagtgtgtgttagtctgctgtgagagtgtatcagtctgctgtgagtgtgtgttagtctgctgtgagtgtgtgttagtctgctgtgagtgtgtgttagtctgctgtgacaCTCCCTCATCATGTCCTCCCGCCCACGTTTCCCCTCTCTTACTCAATCAGGCCAGTTTGCTGGGGGATGGCAGATCTAGGACTggatgtaccacacacacacacagacacaagccaAGATAAGGATCAATAATCCCTTAAATGTAGTCTTCAGTGAGGGGGATCCCTCCATGGATAAACACAGGATGGATAAAAACAACCAGTCTTTTAACTAGGAGAGCCTGGTTACTTTGGAATACATTCCTTTGTGTATTAActtagtgtgtatttgtgtggcgCTGCTAGTTATGTGGCCTCTACCCTGCTAGGACTCACGAGAGACTGGGTGGGTGGAGAGCTTTGGTGAATCTCTGCCAAGCTTCTGGTGAATCTAGTACACAAACTGTTCATTGACACATTTTTGACATCTTGATTAAAGTTTGCTAGGAGAGGTTAAAAAGGCGTGAACATGGTTGTCTGATTTTAGCCTCTGAAACATTTAATGAATACCCACTGGGAAAAGACGTCAGATCACCATCCAATTTTGGTTGATATTTGAGTTTACTTGTCAACCAACATATATCAACCTTGAAATAAACCACAGAGCTAGCTTGGCATGGCTAACTATGGGTGGTTGCTGGTAGGCTACAAGTGTAGAATAGCAATAGAATGACATGAGCTAGTGAGCAACGCTACTGATCTGTGTGTTTGTGGCTAGTGTTATGAGAAGTAGATCATTTATCAGGGGCTTGTTTTACTTGTCAGATAGAAAATAGTAGCAAGCAACTGTCCATGGTGGCCCTGGTTGACTGGCTTGTCTCTCTTTACATACCGTCTGTAATCACAGTTAACAAAAGAGATCATTAGCCAGGTTTTGAAAAGACCAAACCTCAACTCTTTGTTTAGAAAACAATGATCAACCCTGTTATGATTAAAGAACAGCATAATTCTAGACAAGCTGGAGGTCTCCCGTGGAGTtggctgtaagtgtgtgtgtgtgtgttgataatAGCTGTTGCGCAGGCTGATAGGCTAATAGAAGGCCTGCAGGAGACgactgtgttgattaacatggcAGACGTGCCTCgccgacacacagacacacacatgcttaAATATGCTAATCAGGAAGGATTCTTCCAGAGTCTGCTCTCAGCTCACAGAACCCCCACAGAGCAACAGATGGTGAAGaagggcagtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtttgtgtaaccttcatttaactaggcaagtcttatttacaatgacggtctaccccgg
>TU384574
gtgtgtgttagtctgctgtgagtgtgtgttagtctgctgtgagtgtgtgtgttagtctgctgtgagtgtgtgtgttagtctgctgtgagtgtgtgtgttagtctgctgtgagtgtgtgtgtcagtctgctgtgagagtgtgttagtctgctgtgtgagtgtgttagtctgctgtgagtgtgtgtgttagtctgctgtgagtgtgtgttagtttgctgtgagtgtgtgtgttagtctgctgtgagtgtgtgttagtctgctgtgagagtgtatcagtctgctgtgagtgtgtgttagtctgctgtgagtgtgtgttagtctgctgtgagtgtgtgttagtctgctgtgacaCTCCCTCATCATGTCCTCCCGCCCACGTTTCCCCTCTCTTACTCAATCAGGCCAGTTTGCTGGGGGATGGCAGATCTAGGACTggatgtaccacacacacacacagacacaagccaAGATAAGGATCAATAATCCCTTAAATGTAGTCTTCAGTGAGGGGGATCCCTCCATGGATAAACACAGGATGGATAAAAACAACCAGTCTTTTAACTAGGAGAGCCTGGTTACTTTGGAATACATTCCTTTGTGTATTAActtagtgtgtatttgtgtggcgCTGCTAGTTATGTGGCCTCTACCCTGCTAGGACTCACGAGAGACTGGGTGGGTGGAGAGCTTTGGTGAATCTCTGCCAAGCTTCTGGTGAATCTAGTACACAAACTGTTCATTGACACATTTTTGACATCTTGATTAAAGTTTGCTAGGAGAGGTTAAAAAGGCGTGAACATGGTTGTCTGATTTTAGCCTCTGAAACATTTAATGAATACCCACTGGGAAAAGACGTCAGATCACCATCCAATTTTGGTTGATATTTGAGTTTACTTGTCAACCAACATATATCAACCTTGAAATAAACCACAGAGCTAGCTTGGCATGGCTAACTATGGGTGGTTGCTGGTAGGCTACAAGTGTAGAATAGCAATAGAATGACATGAGCTAGTGAGCAACGCTACTGATCTGTGTGTTTGTGGCTAGTGTTATGAGAAGTAGATCATTTATCAGGGGCTTGTTTTACTTGTCAGATAGAAAATAGTAGCAAGCAACTGTCCATGGTGGCCCTGGTTGACTGGCTTGTCTCTCTTTACATACCGTCTGTAATCACAGTTAACAAAAGAGATCATTAGCCAGGTTTTGAAAAGACCAAACCTCAACTCTTTGTTTAGAAAACAATGATCAACCCTGTTATGATTAAAGAACAGCATAATTCTAGACAAGCTGGAGGTCTCCCGTGGAGTtggctgtaagtgtgtgtgtgtgtgttgataatAGCTGTTGCGCAGGCTGATAGGCTAATAGAAGGCCTGCAGGAGACgactgtgttgattaacatggcAGACGTGCCTCgccgacacacagacacacacatgcttaAATATGCTAATCAGGAAGGATTCTTCCAGAGTCTGCTCTCAGCTCACAGAACCCCCACAGAGCAACAGATGGTGAAGaagggcagtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtttgtgtaaccttcatttaactaggcaagtcttatttacaatgacggtctaccccgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384572 False 1630 lncRNA 0.45 2 29016469 29023453
TU384574 True 1630 lncRNA 0.45 2 29019500 29023453

Neighbor

gene id symbol gene type direction distance location
LOC110521072 plcb1 coding upstream 81716 28699067 ~ 28934753 (+)
LOC110522446 bmp2 coding upstream 379956 28630004 ~ 28636513 (+)
LOC110522445 LOC106608054 coding upstream 449169 28558200 ~ 28567300 (+)
LOC110522440 atad2b coding upstream 1054102 27800923 ~ 27962367 (+)
LOC110522450 LOC106608065 coding downstream 130021 29153474 ~ 29163882 (+)
LOC118964462 NA coding downstream 151873 29174963 ~ 29176894 (+)
LOC118964461 NA coding downstream 159426 29182879 ~ 29186037 (+)
LOC110522451 LOC106608077 coding downstream 316083 29339536 ~ 29348164 (+)
LOC110522452 LOC106608075 coding downstream 398841 29422294 ~ 29461382 (+)
G339767 NA non-coding upstream 15355 28998955 ~ 29001114 (+)
G339747 NA non-coding upstream 35965 28979779 ~ 28980504 (+)
G339577 NA non-coding upstream 77336 28936324 ~ 28939133 (+)
G339578 NA non-coding upstream 80291 28935188 ~ 28936178 (+)
G339694 NA non-coding upstream 98899 28916290 ~ 28917570 (+)
G339721 NA non-coding downstream 118554 29142007 ~ 29142351 (+)
G339719 NA non-coding downstream 119538 29142991 ~ 29146900 (+)
G339841 NA non-coding downstream 172358 29195811 ~ 29196058 (+)
G339844 LOC106608064 non-coding downstream 176870 29200323 ~ 29201127 (+)
G339693 NA other upstream 100930 28914599 ~ 28915539 (+)
G339660 NA other upstream 157314 28858716 ~ 28859155 (+)
LOC118964415 LOC106608050 other upstream 1414913 27537262 ~ 27601564 (+)
LOC110522355 plekhg1 other upstream 1831499 27054628 ~ 27185449 (+)
G336464 NA other upstream 2121632 26892229 ~ 26894837 (+)
G339830 LOC100846954 other downstream 143065 29166518 ~ 29166996 (+)
G339928 NA other downstream 311916 29335369 ~ 29336939 (+)
G342538 NA other downstream 2358373 31381826 ~ 31382749 (+)
LOC110522493 LOC106608104 other downstream 2394502 31417955 ~ 31422086 (+)
G342571 NA other downstream 2427680 31451133 ~ 31451476 (+)

Expression


Co-expression Network