G339830 (LOC100846954)


Basic Information

Item Value
gene id G339830
gene name LOC100846954
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29166518 ~ 29166996 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU384628
atgtgattttctggattttttttctcattttgtctgtcatagttgaggtgtacctatgatggaaattacaggcctctctcatctttttaagtgggagaacttgcacaattggtggctgactaaatacttttttgccccactgtacatgcccttctgaagtttgccaatgaacatctgtaTGATTCATAAGACAACTGGGTGAAaatgttgtggtcagatgagaccaaaatagagctctttggcatcaactcaactcgccgtgtttggaggaggaggaatgctgcctatgaccccaagaacatcatccccaccgtcaaacatggaggtggaaacattatgctttgggggtgtttttctgctaaggagacaggacaacttcaccgcatcaaaagGACAATGGATGGGGACATGTACcctcaaatcttgggtgagaacctccttccctcagccagggcatggAAAATGGGTCgcggatgggt

Function

NR:

description
transposase-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384628 True 479 TUCP 0.45 1 29166518 29166996

Neighbor

gene id symbol gene type direction distance location
LOC110522450 LOC106608065 coding upstream 2636 29153474 ~ 29163882 (+)
LOC110522448 plcb4 coding upstream 26380 28958084 ~ 29140138 (+)
LOC110521072 plcb1 coding upstream 231765 28699067 ~ 28934753 (+)
LOC110522446 bmp2 coding upstream 530005 28630004 ~ 28636513 (+)
LOC110522445 LOC106608054 coding upstream 599218 28558200 ~ 28567300 (+)
LOC118964462 NA coding downstream 8330 29174963 ~ 29176894 (+)
LOC118964461 NA coding downstream 15883 29182879 ~ 29186037 (+)
LOC110522451 LOC106608077 coding downstream 172540 29339536 ~ 29348164 (+)
LOC110522452 LOC106608075 coding downstream 255298 29422294 ~ 29461382 (+)
LOC110522453 LOC106608073 coding downstream 296959 29463955 ~ 29478206 (+)
G339719 NA non-coding upstream 19618 29142991 ~ 29146900 (+)
G339721 NA non-coding upstream 24167 29142007 ~ 29142351 (+)
G339781 NA non-coding upstream 143065 29016469 ~ 29023453 (+)
G339767 NA non-coding upstream 165404 28998955 ~ 29001114 (+)
G339747 NA non-coding upstream 186014 28979779 ~ 28980504 (+)
G339841 NA non-coding downstream 28815 29195811 ~ 29196058 (+)
G339844 LOC106608064 non-coding downstream 33327 29200323 ~ 29201127 (+)
G339848 NA non-coding downstream 41381 29208377 ~ 29208841 (+)
G339849 NA non-coding downstream 42001 29208997 ~ 29209272 (+)
G339693 NA other upstream 250979 28914599 ~ 28915539 (+)
G339660 NA other upstream 307363 28858716 ~ 28859155 (+)
LOC118964415 LOC106608050 other upstream 1564962 27537262 ~ 27601564 (+)
LOC110522355 plekhg1 other upstream 1981548 27054628 ~ 27185449 (+)
G336464 NA other upstream 2271681 26892229 ~ 26894837 (+)
G339928 NA other downstream 168373 29335369 ~ 29336939 (+)
G342538 NA other downstream 2214830 31381826 ~ 31382749 (+)
LOC110522493 LOC106608104 other downstream 2250959 31417955 ~ 31422086 (+)
G342571 NA other downstream 2284137 31451133 ~ 31451476 (+)
G342707 LOC106608120 other downstream 2618869 31785865 ~ 31786206 (+)

Expression


Co-expression Network