G339859


Basic Information

Item Value
gene id G339859
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29330943 ~ 29363159 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU384658
ggcaaagtgggtgaggttatatcctgcctgtttggccctgtccgggggtttcATCAgattgggccacagtgtctcctgacccctcctgtctcggcctccagtatttatgctgcagtagtttatgtgtcttgggggctagggtcagtctttatatctggagtacttctcctgtcttatccggtgtcctgtgttaatttaagtatgctctctctaattctctctttctctctttctttctttctttctctctctctctcactctgaggaccggagccctaggaccatgcctcaggactacctggcataatgactccttgctgtccccagtccacctggccgtgctgctgctccagtttcaactgttctgcctgcggctatggaaccctgacctgttcaccggacgtgctacctgtcccaaacttgctgttttcaactctctagagacagcaggagcggtagagatactcttaatgattggctatgaaaagccaactgacatttactcctgaggtgctgacttgctgcacttgctgataattattatttgaccatgctggtcatctatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccacctctcatagcctgattcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttcttcacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtacgaagggctatataaaataaatttgattgattgattgatttc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384658 True 830 lncRNA 0.48 3 29330943 29363159

Neighbor

gene id symbol gene type direction distance location
LOC118964461 NA coding upstream 144906 29182879 ~ 29186037 (+)
LOC118964462 NA coding upstream 154049 29174963 ~ 29176894 (+)
LOC110522450 LOC106608065 coding upstream 167061 29153474 ~ 29163882 (+)
LOC110522448 plcb4 coding upstream 190805 28958084 ~ 29140138 (+)
LOC110521072 plcb1 coding upstream 396190 28699067 ~ 28934753 (+)
LOC110522452 LOC106608075 coding downstream 59135 29422294 ~ 29461382 (+)
LOC110522453 LOC106608073 coding downstream 100796 29463955 ~ 29478206 (+)
LOC110522454 LOC105017530 coding downstream 117017 29480176 ~ 29632371 (+)
LOC110522456 LOC106608096 coding downstream 270517 29633676 ~ 29641117 (+)
LOC110522458 mmsa coding downstream 322873 29686032 ~ 29706801 (+)
G339864 NA non-coding upstream 97401 29233340 ~ 29233542 (+)
G339856 NA non-coding upstream 110040 29220617 ~ 29220903 (+)
G339855 NA non-coding upstream 111173 29219347 ~ 29219770 (+)
G339854 NA non-coding upstream 113722 29216731 ~ 29217221 (+)
G339849 NA non-coding upstream 121671 29208997 ~ 29209272 (+)
G340011 NA non-coding downstream 134988 29498147 ~ 29498534 (+)
G340081 NA non-coding downstream 284303 29647462 ~ 29647784 (+)
G340106 LOC106608094 non-coding downstream 320661 29683820 ~ 29684213 (+)
G340107 NA non-coding downstream 322193 29685352 ~ 29685606 (+)
G339830 LOC100846954 other upstream 163947 29166518 ~ 29166996 (+)
G339693 NA other upstream 415404 28914599 ~ 28915539 (+)
G339660 NA other upstream 471788 28858716 ~ 28859155 (+)
LOC118964415 LOC106608050 other upstream 1729387 27537262 ~ 27601564 (+)
LOC110522355 plekhg1 other upstream 2145973 27054628 ~ 27185449 (+)
G342538 NA other downstream 2018667 31381826 ~ 31382749 (+)
LOC110522493 LOC106608104 other downstream 2054796 31417955 ~ 31422086 (+)
G342571 NA other downstream 2087974 31451133 ~ 31451476 (+)
G342707 LOC106608120 other downstream 2422706 31785865 ~ 31786206 (+)
G343958 NA other downstream 3331827 32694986 ~ 32704371 (+)

Expression


Co-expression Network