G340155


Basic Information

Item Value
gene id G340155
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29798259 ~ 29803141 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU385008
TGTGCCATTTGCTTGCTTTGGAACCAAAATAACCATCAGACAACCAAGAGTCAACCAATCCACCTTacagcattaaaaaaaaaaactaataatTTATTTCTGTGTACTATTCCCACATTAAATAAAAGATGTCGTTGGACAGATTGAAatcaaagagacagagaaagaggggcaggGGAACAAAACTCTGACATGCAAAAATACCGTTCTCTCTTCCCTTACCACACCTTACAGATCACAGGGGTCCAGGGCTAGTCACTACAAAAAACAGAGACCCCCTTTAGctggtcctgggggggggggcacagtgTGTGGGGTCCCCAAGTGGAGTGGTAAGAAGAGAGTAGATGCCCACTGAGCTAAGGTCAGTTTGCATCCCCCATCCGTAATGGTGAAGGTTAGGATTTGGAAggggtaaactgatcctagatcggtGTACCAAAATAGAAAATTCTAGCCAGAGCAAGAAACCAACTGGAATATCTAATAAAAAGCTTGACAACTCTTCCTCTCGTACAATGAGATGGGAGAAGAGTGGTTGGTCTCTGGGGTGAATGGTAGCTAGGCAACCAGTGGGATGGTGGTCCTCCAAGACCAGTTTAAGTAGCCTTGTCATGTTCTTAGACCCTAAACTCTGAAATGGCAAGACAACTTTTGATTTCTCTGTAGTGAAGACCATTCATTGACTTACTTTGAAGCCACAAGGGATGGGAAGGTATCAGCTAACATGGATGCCAGTCTGTTTCTTCTTTAGCTCACTCCTTTGTCAAAACAGACCAGAGCCATAGATATACATTAAATAGATGTCAATGTCTTTTGAAATCACACCAGAATCTGGCCACAAACAGACTGACGAGGAAGCCCTTCAACTGGGGTGCATTCAATGAGGTGCAAAGTTAAGAACAATGCAGCTAGAAAGATTTATATCTAACAGGACACCCTCATGAACAGACCTCTGGTGTAGATGGTCAAACGGAGCTGTCTAGCCTAACATGGCAGGCAATAATGTCCATGGTCCCTACTGGCACTGCCAGGGGTTCACACTTTTAAAAACTAGGGAAGAAATAAAGACGTTCTATGAGAATGAGGAAAGCGGGTTGGACCAAAACAAAGACCAATTTAATTTGAAATGGGACAGGATCCCCCTCACACCTCTAGACTGAAGCAGGATCAGAGTGATGTCAGAAAGAGTCAAGATTCAACAGGAAGTGTATCTGCACAGGGAGCCAAATGGAAGTCTTCCCAGTGAATGGAACAGAGTGCCATTGGAACAGTTCAAAGCAGTATGGCTTTggaacagctagcctagctcccATCTGTGCTTCCGGATCTGATGACATCGTTGCTGTCCAATCCTTCATTTTTATTCTAGTCCTAATAGTCTGGATGGGTGAAAATAAATTAGCAGAGAAAAGAAACAAAAAACCTAACTAATCAATCCCTCCAAAAACACAATACACAAAAAAAGATGCCCTCAGATGTCAAATGAAGAGCGCAAACACTCTGTATACAAATcgtcaataaaaaaaacaaaaggtCATCTGATCTGTTTTCAaacgcactcacacacatatactaTAACCACCCACACAGCAGCCTGTGTGTAAAGTATCTGTTGACATCCCTTCTCACTTCCTATTCTGCAATGTTAGCCGGTTGAAGAGATGTTGAGTAACAGCTCCTAACTGTTTGCATCTGTTTTATTAAAGCTGCaaactctgaaataacagctGCTAAAACTTTACAGAGATGCAGACACTGAGTAAACCTGGCCCATAATGTGTTGTGTATGCTAGTGTACACCTCTTATAGTTGCTCTCTCAGCCTATGGGACTTCATCACAGCTCAGCAGTACTGTACATTAGTGTCTCTGCTAGACAAGGAGCAGATCTTTAgtaactactaccaccaccattactactactaccaccaccaccaccacaactactaccaccactgccattactactaccaccactgccattactactactaccaccaccaccattactactactaccaccaccaccattactactactaccaccaccaccacaactactaccaccactgccattactactaccaccaccactgccattactactaccaccaccgtcattactaatactactacgaccaccaccaccgccattactactaccaccaccaccagcattactaccaccaccgccataactactactaccaccaccactgccgccattactactactaccaccaccaccaccattactactaccaccgccattactactactaccaccgccaccattaccactactaccaccatcattactactactactaccaccaccattactactactaccaccatcattactactactaccaccgccaccattaccactactaccaccatcattactactactactactaccgccattactactactaccaccgccattactactactaccaccgccattactactactaccaccgccattactactactaccaccatcattactactactactaccgccattactactactaccaccgccattactactactaccaccgccattactactactaccaccgccattactactactaccaccgccaccattaccactactaccaccatcattactactactactaccaccaccattactactactaccaccatcattactactactaccaccgccaccattaccactactaccaccatcattactactactactaccgccattactactacaaccaccacttcAACCaccattattactactactaccaccaacaccaccattactactacaaccaccactattaccaccaccaccttctatacctagctcaTGGTGTCCCTGTGTCTTTACTATACTTCAGGGTTATCTAGAGTTTGAAATAACCGATTTTACACCATcagtcaaaacacacacagccgACCTTTGTTAATTTACTCTGAAAaagaaaatcatatttttttaattcatttttttAGACAAAAAGCAGCCACAAACACATATTTTCTTTGCCATGATTGGAGTTGATAGGAACTGCCTGGTGTGTCTGTCTTTCCCAGACAGAGGAGCTCTCAAATGTTACCGGAGTGTGTGCTGCATCAGAGTAGGGCCCCTATAAAGTGTACTCTAGGCTTGGCCACTAAGGGGAGTGAGTGTACGAGTGTATAATACACAATCTAAATAAACTCAGAGAGCAAACAGGAAATAAGTAAACTGCAAACAATACCTTTGCCCTCCTTTACCAGAggtcaacacactgactcaaacacacacagagcgaaGCCAACAGGAATCCAACATATTTAATAACACTATTACTCCAGCCTGACACTTTGCCATACTGAAACAGGACTCCAGTGCTCTGCATGTTGTTAATTCATAGACAACTGTGATGATTGAAAGACAGAGGGGTGATTGGAAAAAATAGTTTCCAAGTTAGGAGGAATTTGAATGAACAACCTGCAATAGGGAAATAGTTTCCGAGCCCAAAAAAACTTCTCCTTTGTCAATAATTATTTATCTTTCTCAGGAGATTTTTGAGCAATGTTCCAGTGGCTGGCAGTGCATTTTGGGAAAATTAGCTTTGATCTGCAAAAAGGGCCAACACAAGTGCCCAATCTCAAATAGGCCCCTCATTCTTACCCCTCTAAGCACTTACCAAGTGTATCTGAAATGATTGAATAGGTATTACTAAAATGGAAATAGGTCCACCTTTCCCTCTGACAGGCAGGAAGAATTTGcaccatattgcttacacctatccaaacctttcagatctacacaagtgccTAGGAGTTAGGACTATGGGTCTGTTTGGAACTGGGCAATGTTCCGAGTGTTAATCAACACACTCATACCACCACTCTTGTTAAAATAAATGCATGCATATCTTTACAGGCTCCAGCTCTTGGTCTGGGGCACGGGGTGAAAACTGAGCAGCAAGCAGCTGGCGTGTTCGTCTCACAACGTAGGGTTAATGAAAACACAGACAGGGGGAGAAAAGCACACTAACACGCACAACTCATGATTCCCACCAAGCATGCGTGCGCACACACCCATCCACTACATTACTTCACATCCTTTACTTCACGTCCCTTACACATGTACACAATACCCTAAACACTTCCTTTTCCAAACCCCTAGGGAAAACACACACtctcacgaacacacacacaatagcttTTCCAACCCCCTGTTGAATCATGAGATTAAAAAATATACACAAAAAATAAACTCCACAAATATTTCCTTCGAATCTGTCGTTTTCCCACCTTCTTCCATATTTTCACCCTGTGTTATTATTCTTCTTCTGTTTTCCTGTGTTCCAGTGGGTGATTTTGCGTGATGCATCGCCCTCCGGGGGTTTGTGGGTTCACCCTCGACATCATGCCTTAGATACTGCTCCGTTGGAAGGGGGGGGGCAATGTTCTGAGGTTAAAGGTCACCAGACCACATCACACACTCCTCTTCCTTCCCCCTCTAACAGGATCCTACAGCTAACAGGGCAAGGGCCTCTTCATTAAAACATTGTGggatttctgtctgtctgtccagtttAGCCTTGAGCTGTTTTCCAAGATGTCAAGGATCAAAAAAGGGAGGgttgtatgtactgtgtgtgtactgtgtatgagtagtgtgcatgtgcgtgtgtctATGTATATGCAAATGTAGGTGAATCTATGCTTGTGGGTGtatgacaatgtgtgtgtgcatatgggtGTATGactgtgcgtgggtgtgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU385008 True 4780 lncRNA 0.43 4 29798259 29803141

Neighbor

gene id symbol gene type direction distance location
LOC110522463 LOC106608087 coding upstream 119 29787568 ~ 29798140 (+)
LOC110522461 LOC106608092 coding upstream 71058 29717778 ~ 29727201 (+)
LOC110522458 mmsa coding upstream 91458 29686032 ~ 29706801 (+)
LOC110522456 LOC106608096 coding upstream 157142 29633676 ~ 29641117 (+)
LOC110522454 LOC105017530 coding upstream 165888 29480176 ~ 29632371 (+)
LOC110522467 LOC106608085 coding downstream 35228 29838369 ~ 29842910 (+)
LOC110522470 prpf39 coding downstream 139035 29942176 ~ 29952127 (+)
LOC110522472 rs30 coding downstream 149320 29952461 ~ 29957558 (+)
LOC110522479 NA coding downstream 993078 30796219 ~ 30797687 (+)
LOC110522477 mgat2 coding downstream 1013275 30816416 ~ 30823059 (+)
G340153 NA non-coding upstream 27816 29769806 ~ 29770443 (+)
G340125 LOC106608091 non-coding upstream 59858 29737993 ~ 29738401 (+)
G340107 NA non-coding upstream 112653 29685352 ~ 29685606 (+)
G340106 LOC106608094 non-coding upstream 114046 29683820 ~ 29684213 (+)
G340081 NA non-coding upstream 150475 29647462 ~ 29647784 (+)
G340182 NA non-coding downstream 23130 29826271 ~ 29826549 (+)
G340193 NA non-coding downstream 48099 29851240 ~ 29851549 (+)
G340201 LOC107574485 non-coding downstream 55957 29859098 ~ 29890519 (+)
G340219 LOC106608084 non-coding downstream 80662 29883803 ~ 29887768 (+)
G340225 NA non-coding downstream 90607 29893748 ~ 29894413 (+)
G339928 NA other upstream 461320 29335369 ~ 29336939 (+)
G339830 LOC100846954 other upstream 631263 29166518 ~ 29166996 (+)
G339693 NA other upstream 882720 28914599 ~ 28915539 (+)
G339660 NA other upstream 939104 28858716 ~ 28859155 (+)
LOC118964415 LOC106608050 other upstream 2196703 27537262 ~ 27601564 (+)
G342538 NA other downstream 1578685 31381826 ~ 31382749 (+)
LOC110522493 LOC106608104 other downstream 1614814 31417955 ~ 31422086 (+)
G342571 NA other downstream 1647992 31451133 ~ 31451476 (+)
G342707 LOC106608120 other downstream 1982724 31785865 ~ 31786206 (+)
G343958 NA other downstream 2891845 32694986 ~ 32704371 (+)

Expression


Co-expression Network