G340201 (LOC107574485)


Basic Information

Item Value
gene id G340201
gene name LOC107574485
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29859098 ~ 29890519 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU385060
catacaatgacattctagaCTATGGCTGCGTGGCAAGCTGGGGAAGGCCAGGGTACTGAGGCCTACAGGACACTGTGGCCGGGCAGCGTTGAGCTCCTGTCGCAGTGCCTCCAGGTGGCGGAGGGTGGGAGCGCGGAGCAGGCCCTCTCCAGTACGCCACAGCAAAGTGGCTCCACACAGGTCCACCAGAGAACCATCACGAAGGGCACTGCTTTCTCCCTCC

Function

NR:

description
E3 ubiquitin-protein ligase pellino homolog 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU385060 True 223 lncRNA 0.62 2 29859098 29890519

Neighbor

gene id symbol gene type direction distance location
LOC110522467 LOC106608085 coding upstream 16188 29838369 ~ 29842910 (+)
LOC110522463 LOC106608087 coding upstream 60958 29787568 ~ 29798140 (+)
LOC110522461 LOC106608092 coding upstream 131897 29717778 ~ 29727201 (+)
LOC110522458 mmsa coding upstream 152297 29686032 ~ 29706801 (+)
LOC110522456 LOC106608096 coding upstream 217981 29633676 ~ 29641117 (+)
LOC110522470 prpf39 coding downstream 51657 29942176 ~ 29952127 (+)
LOC110522472 rs30 coding downstream 61942 29952461 ~ 29957558 (+)
LOC110522479 NA coding downstream 905700 30796219 ~ 30797687 (+)
LOC110522477 mgat2 coding downstream 925897 30816416 ~ 30823059 (+)
LOC110522488 hs90a coding downstream 1279132 31169651 ~ 31182712 (+)
G340193 NA non-coding upstream 7549 29851240 ~ 29851549 (+)
G340182 NA non-coding upstream 32549 29826271 ~ 29826549 (+)
G340155 NA non-coding upstream 55957 29798259 ~ 29803141 (+)
G340153 NA non-coding upstream 88655 29769806 ~ 29770443 (+)
G340125 LOC106608091 non-coding upstream 120697 29737993 ~ 29738401 (+)
G340225 NA non-coding downstream 3229 29893748 ~ 29894413 (+)
G340224 NA non-coding downstream 5273 29895792 ~ 29896176 (+)
G340223 NA non-coding downstream 7606 29898125 ~ 29898444 (+)
G340227 NA non-coding downstream 13072 29903591 ~ 29907479 (+)
G340226 NA non-coding downstream 20119 29910638 ~ 29914232 (+)
G339928 NA other upstream 522159 29335369 ~ 29336939 (+)
G339830 LOC100846954 other upstream 692102 29166518 ~ 29166996 (+)
G339693 NA other upstream 943559 28914599 ~ 28915539 (+)
G339660 NA other upstream 999943 28858716 ~ 28859155 (+)
LOC118964415 LOC106608050 other upstream 2257542 27537262 ~ 27601564 (+)
G342538 NA other downstream 1491307 31381826 ~ 31382749 (+)
LOC110522493 LOC106608104 other downstream 1527436 31417955 ~ 31422086 (+)
G342571 NA other downstream 1560614 31451133 ~ 31451476 (+)
G342707 LOC106608120 other downstream 1895346 31785865 ~ 31786206 (+)
G343958 NA other downstream 2804467 32694986 ~ 32704371 (+)

Expression


Co-expression Network