G340279 (LOC106608098)


Basic Information

Item Value
gene id G340279
gene name LOC106608098
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 30005926 ~ 30006499 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU385146
AATTTGAACATGATGCTCTCTGCCAATGTCCTGCCAGTAGTTTAACAGGCGATCCTGACCCTCTTCTTCCATAGCATCGTTTACCCCATCCGCCCCCCCGCTTCTGCAGAGGTCTGAATCGAAGTCATCCTCGTTGAAGGCATCCAAGTCCTCTAGCGTGATAGTGGGTCTTGATCCAGATTCACCCCCGCGACTGTCACCTCCTTCGCCACTCATGTGACAGCCTCCTCCATTCATGGTTATTTTGACAGAAGTGCCCAAAAACTACTTGCAACAGTCGCAGATCtccagcgggggggagattgtTGAAGCGATAACAGCAGGCTACAATGTTGCCGACCTAGTGAGCTTGATAGCTGGCCAGCAAGTCCAGAAAACTTTACAAACCAAACGAAGGAATCATGACAACCACGGCATTAGGTCGACAGTGCCTGTCAAATACGTACGACTGATGTACAAAGTATAATATAGTTAGTAAAACCACCGGGTTCTTGTGCACATAAAGCAACTTCGAATGTCTCTTTCCCCGTGCGGTGA

Function

NR:

description
heme-binding protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU385146 True 537 lncRNA 0.49 2 30005926 30006499

Neighbor

gene id symbol gene type direction distance location
LOC110522472 rs30 coding upstream 48368 29952461 ~ 29957558 (+)
LOC110522470 prpf39 coding upstream 53799 29942176 ~ 29952127 (+)
LOC110522467 LOC106608085 coding upstream 163016 29838369 ~ 29842910 (+)
LOC110522463 LOC106608087 coding upstream 207786 29787568 ~ 29798140 (+)
LOC110522461 LOC106608092 coding upstream 278725 29717778 ~ 29727201 (+)
LOC110522479 NA coding downstream 789720 30796219 ~ 30797687 (+)
LOC110522477 mgat2 coding downstream 809917 30816416 ~ 30823059 (+)
LOC110522488 hs90a coding downstream 1163152 31169651 ~ 31182712 (+)
ppp2r5cb LOC106608134 coding downstream 1180727 31187226 ~ 31227364 (+)
slc25a29 LOC106608124 coding downstream 1385680 31392179 ~ 31401929 (+)
G340267 NA non-coding upstream 16883 29988395 ~ 29989043 (+)
G340263 NA non-coding upstream 27596 29978075 ~ 29978330 (+)
G340260 NA non-coding upstream 30467 29975142 ~ 29975459 (+)
G340259 NA non-coding upstream 31576 29973347 ~ 29974350 (+)
G340258 NA non-coding upstream 33540 29972162 ~ 29972386 (+)
G340281 NA non-coding downstream 8021 30014520 ~ 30057088 (+)
G340326 NA non-coding downstream 86610 30093109 ~ 30152698 (+)
G340336 NA non-coding downstream 98630 30105129 ~ 30140482 (+)
G341140 NA non-coding downstream 152315 30158814 ~ 30159019 (+)
G341152 NA non-coding downstream 167816 30174315 ~ 30174711 (+)
G339928 NA other upstream 668987 29335369 ~ 29336939 (+)
G339830 LOC100846954 other upstream 838930 29166518 ~ 29166996 (+)
G339693 NA other upstream 1090387 28914599 ~ 28915539 (+)
G339660 NA other upstream 1146771 28858716 ~ 28859155 (+)
LOC118964415 LOC106608050 other upstream 2404370 27537262 ~ 27601564 (+)
G342538 NA other downstream 1375327 31381826 ~ 31382749 (+)
LOC110522493 LOC106608104 other downstream 1411456 31417955 ~ 31422086 (+)
G342571 NA other downstream 1444634 31451133 ~ 31451476 (+)
G342707 LOC106608120 other downstream 1779366 31785865 ~ 31786206 (+)
G343958 NA other downstream 2688487 32694986 ~ 32704371 (+)

Expression


Co-expression Network