G343879


Basic Information

Item Value
gene id G343879
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 32599180 ~ 32599995 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU389124
cacctaataatccccagtttacaattggctcattcatctctctcctgtaactattccccaggttgttgctgcaaatgagaacgtgttctcagtcaacttacctggtaaaataacggataaattaaaaattaaaaaattaaaactgcctgttactcaggcccagaagctaggatatgcatataattgatagattttgatagaaaaaaactctaaagtttctatTACTGATATAAttctgtctgtgagtataacagaactgatatgatAGGCGAAAGGCCACTATTTTCAGTGGCTAGTACTATAATTCTAAGCCCAAGTCctcccaaattgcagttcctagggcttctactagatgtcaacagtctttagaaagagtttcaggctggttcttagaaaaatgaccaaaaaattgtagtttttctaggtggctcccattttggctgtagtgtttccaagagCATGGAGGAAAGCACATTCTttcttatttatctccggtaatgaacatactattcttcgtcttaaattgtatcgtttatttgcgtattaggaTACCTAAGGTTTGACTGTAAATgatgtttgacttgtttggaaaagtttattagtaacgttagtaacgtttgggattcattttgtatgcattttgatggagggaaactgaatggattattgactgaagaaggacattatcaaacaaaaggaccatttgtgatgtaactgggacattttggagtgctaacagaagatcatcaaaggtaaggcatttttttatatcgctatttctgacttttgtatcGCACCTtcctggttgaaatatga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU389124 True 816 lncRNA 0.36 1 32599180 32599995

Neighbor

gene id symbol gene type direction distance location
LOC110522505 LOC106608111 coding upstream 57693 32534581 ~ 32541487 (+)
antiprot1 antiprot1 coding upstream 475338 32121260 ~ 32123842 (+)
LOC118964510 NA coding upstream 506734 32092160 ~ 32092446 (+)
LOC110521080 ints9 coding upstream 516852 32072761 ~ 32082328 (+)
tdrd6 tdrd6 coding upstream 546338 32028040 ~ 32052842 (+)
LOC110520986 NA coding downstream 66293 32666288 ~ 32699603 (+)
rnh1 rnh1 coding downstream 243939 32843934 ~ 32850818 (+)
LOC110520987 NA coding downstream 254062 32854057 ~ 32865131 (+)
LOC118964496 NA coding downstream 310715 32910710 ~ 32912647 (+)
LOC110521081 LOC106571614 coding downstream 365212 32965207 ~ 33118062 (+)
G343861 NA non-coding upstream 11585 32587390 ~ 32587595 (+)
G343845 NA non-coding upstream 24869 32574036 ~ 32574311 (+)
G343813 NA non-coding upstream 45673 32553307 ~ 32553507 (+)
G343776 NA non-coding upstream 74257 32524715 ~ 32524923 (+)
G343734 NA non-coding upstream 115791 32483147 ~ 32483389 (+)
G343910 NA non-coding downstream 17259 32617254 ~ 32617490 (+)
G343919 NA non-coding downstream 21409 32621404 ~ 32621661 (+)
G344041 NA non-coding downstream 144996 32744991 ~ 32745199 (+)
G344042 NA non-coding downstream 145382 32745377 ~ 32745749 (+)
G344121 NA non-coding downstream 240117 32840112 ~ 32843737 (+)
G342707 LOC106608120 other upstream 812974 31785865 ~ 31786206 (+)
G342571 NA other upstream 1147704 31451133 ~ 31451476 (+)
LOC110522493 LOC106608104 other upstream 1179924 31417955 ~ 31422086 (+)
G342538 NA other upstream 1216431 31381826 ~ 31382749 (+)
G339928 NA other upstream 3262241 29335369 ~ 29336939 (+)
G343958 NA other downstream 94991 32694986 ~ 32704371 (+)
LOC110521085 LOC100380634 other downstream 872057 33469529 ~ 33489784 (+)
G344647 NA other downstream 952132 33552127 ~ 33554003 (+)
LOC110522521 NA other downstream 984983 33584945 ~ 33586386 (+)
LOC110522536 LOC105024319 other downstream 1790978 34390869 ~ 34394175 (+)

Expression


Co-expression Network