G344417


Basic Information

Item Value
gene id G344417
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 33114504 ~ 33118054 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU389758
GCAACACACGTTTTATTCAGAGTAAGAGATGTTAACACCAGCATGATAAAAATCGTACAAACGTCACAATTTCAAATGAAATATCATAGCAACTTGTGATTTTAAACATATACAACAAAAATGATAGATCAACAAAAATCATGCCATGTGGTACCAAAATTAAGTTGGAAAGTTTGCAAGAGGGGgcaggggaaaggagagaaggaaataCATTTAGTATAAAATCATTTTCATCAAAGCATTACTCAAAATAAATTATAATTGTAGCAGTTTAATAAATTCATGAATTCCCAAATATTAATACGAAAATTATTCTGCATTCTAGCATGTGACATGTTAGTGTTCTGTATGTAAATAATTACAGATAAACTTTAACATTTGATATTACAATATGAACTGACTGTTGGTGAGCAGCAGATTTGTGCTTAAAATTCCCATTTCCTTTGTATCAGTAAGAATAATTGACTAAAGAAAAATAGTAGAAGCTGTCGATCTGTCTAAAGCTTTGCTATATTGGCAATAAGCTGCTGACACAAAGCTTTAGACACGGACATGAGGAGTCAAATGGAATGTGGACCTCTAGTCTAGTAGAAGTCCACATTCCACCTGTGAGATCAGGTCAATGACTATAGCACCCTCAGGTTGACTATCAAAAAGGGTTGTCTGAAGTGAACTTGACTCACGGAGCTCTGTCTCGTTGACTCCACACACAAACTTACTTCCACATATGTCTTAcgtgaatcattctctctatttaCCCATATTCATACTCGCATGAAGTGCATGCACGATAAACTGTATTAAGAACACATTTATAATCCATTAGTAGAGTCATCTTCAGCAAGTGCAAGTCGCATGGTTATGCCAATTTGTATAGGAAATTTAATTAGTAATAAGTACTTACTATGTAAGGGTAGAATACTGCAGTTGGCTGATGTTTAAAAGATAACGGCATTATAGGGGGCTGACATTGACACTTACATTGCATTATAATGGTGTTTTTAAAGGTCCAGttcagctgtttttatctcaatatcaaatcctttctgggAAACAAGTAggttactgtgattgttttcaattaaaatggtcaaaaataaacaaaaatagcttctcagcaaaaagcaatttctcaagcaatactTTTTcttggactgtctgggagtgatctgagtggggaagggaaaactgaaaactagctgttattggcagagatttGGAACTCGCTTTCTTATTAGTCTTTTAACTAATTTAcagccaaaactccatcccaccaaaacaggcagaaatttcaggcagtcttttaaAACAGCTCTTACACGAAAAGCGCATTaacataattttcacaatttcacagtattattccaaactcAATGTGCGGAAATATATATGAAACACagaaaaatcatgtttttgactgcattgggcctttaagtaCTATGAATACATTTATTAAGGGTGTCTCCTAGAAAGTGATTGCAATTTACTCATGAAATTGTCATCAATCATAGAAACAATCATAGACCACTATTACCAATGTCACTGTTGTTGGTTAGCATTCTTTGCTGTTATAATGCATATcaataacatgtttttttttaccaatatATCCACTTTTAGGACTGAATCAAAGAGCAGTCTTTATCTCATGTAATGTGTTGTGGCTCAGACACATAGATGCATGATCGCAAAGACATTTCAACTGAACAAGTGCAATAATATACTATGATTAATGAAGGACGTTGACCCTGTAAGTCGAGCGCATCAATCAGCCATTGTAAAGATAACTTTTCTACAAAACCTCTGACCATCAATTTGAGCTTTCAAGTACCTCTTTAAGTTTCAATCAAAACATCAAAACATGGAAACAAAGGTGTCCCTGTGCAAAATGTAACATGAAAAGAACGAAACTCATTAACTCATCCATCGTTCATTTTGGAACTGATCTCCCCACGTTGAATTTCTAAAACATGATTGTATTAAAAGATTTATACAAAACTTAATACATTTACATTGTTAGTAAAAAGAGTTTTATCAGCTATAATTTCATTTATAAGAAATTGCATATACCCAAACTTTTTCTATATCGATTGCATCCCATATCTAAACAAGTGATGTAATCATTGTTATACCAATATTGCTGATAAGTGGTCCTACTAAGTATTCAATAGAATTCAAATAAATTAGTAATGCTAGATTGTCTCCTTTATATTTTCCATAGCCATTGTTCGTTGGACATCTCGCTCTGTGTTTTTAACAACACAGATTACTAAGACTTTTTATTTCTAAGTAAATGGAAGTATAGTCGTTTTAGGTTATGGGAGTTGGACATCTCGCTGTGTGTTTTTAACAACACAGATTACTAAGACGTTTTATTTCCAACTAAATGAAGTATAGTCATTCTAGGTTATGGGAGTTGGACATCTAACTGTGTGTTTTTAACAACACAGATTACTAAGACGTTTTATTTCTAAGTAAATGAAGTGTCATTCTAGGTTATGGGAGTTGGACCAGTTAGCAGTTTCCGTGTCATGATGTTTAAAATGTGTCATATTTATACATGGTTTCTTCTTAAACTTGATTTAAACACAGACATTATTATTAGTGTTCACACAGACCACTGAAGACAAAGAGTTTTTCAAACATTGTTACAAAAATCAATACATTTACATCCATTAAACAATCTTCACACCAAAGGTCATTTTTGTTTTCTATGACATACTTAGAGAAAAGCTTATCTAAAAATGATTGGTCCTCACATTGTCCTCATCTGGCTCCCCACCCGTGGCACTCAGTTCTGATTGGTCCTCACATTGCCCTCATCTGGCTCCTCACCCGTGGCACTCAGTTCTGATTGGTCCTCACATTGCCCTCATCTGGCTCCCCACCCGTGGCACTCAGTTCTGATTGGTCTTCACATTGCCCTCATCTGGCACCCTACCCGTGGCACTCAGTTTTGTCCTTTTTATCAATATCGTTAAAATAATGAATGATACAAGCTTACAATTAATAAATACATATACACTAAAATGTGCATACATTAGCAGCTATAAACAGTACATCACATTATATTAGGTCATATGAAAATGTACAAAACGTGAATGTTCTTTGAAACTTTTGCCATTGGGAACTATTTTTAAAGCAAGGCAGAAAACCCATTACAATGGAGCTCAGAGCATTACAGCATaatgaataaaataaatactACGGTAAATTACAGCAGCAACAATCATAATCCATTCTCTTTTGACCTTTATTTGTTGCTTTAACATCATTTGATTTGGCCTCAGACTGGGCCTTTTGGCCAGAAGATAGGCTACTACACTTGGATGCCTTGCACCGCTTGTTTGATGTTCTCCAATAGTTCCTTGTTCTCTGGACTCTGGTATTGGTCCTGATGGGTGTACATGTCTGTCAAAGTACTCACATACGTGTCAAAGTTTTGTTCATTCATTGGCT
>TU389759
GCAACACACGTTTTATTCAGAGTAAGAGATGTTAACACCAGCATGATAAAAATCGTACAAACGTCACAATTTCAAATGAAATATCATAGCAACTTGTGATTTTAAACATATACAACAAAAATGATAGATCAACAAAAATCATGCCATGTGGTACCAAAATTAAGTTGGAAAGTTTGCAAGAGGGGgcaggggaaaggagagaaggaaataCATTTAGTATAAAATCATTTTCATCAAAGCATTACTCAAAATAAATTATAATTGTAGCAGTTTAATAAATTCATGAATTCCCAAATATTAATACGAAAATTATTCTGCATTCTAGCATGTGACATGTTAGTGTTCTGTATGTAAATAATTACAGATAAACTTTAACATTTGATATTACAATATGAACTGACTGTTGGTGAGCAGCAGATTTGTGCTTAAAATTCCCATTTCCTTTGTATCAGTAAGAATAATTGACTAAAGAAAAATAGTAGAAGCTGTCGATCTGTCTAAAGCTTTGCTATATTGGCAATAAGCTGCTGACACAAAGCTTTAGACACGGACATGAGGAGTCAAATGGAATGTGGACCTCTAGTCTAGTAGAAGTCCACATTCCACCTGTGAGATCAGGTCAATGACTATAGCACCCTCAGGTTGACTATCAAAAAGGGTTGTCTGAAGTGAACTTGACTCACGGAGCTCTGTCTCGTTGACTCCACACACAAACTTACTTCCACATATGTCTTAcgtgaatcattctctctatttaCCCATATTCATACTCGCATGAAGTGCATGCACGATAAACTGTATTAAGAACACATTTATAATCCATTAGTAGAGTCATCTTCAGCAAGTGCAAGTCGCATGGTTATGCCAATTTGTATAGGAAATTTAATTAGTAATAAGTACTTACTATGTAAGGGTAGAATACTGCAGTTGGCTGATGTTTAAAAGATAACGGCATTATAGGGGGCTGACATTGACACTTACATTGCATTATAATGGTGTTTTTAAAGGTCCAGttcagctgtttttatctcaatatcaaatcctttctgggAAACAAGTAggttactgtgattgttttcaattaaaatggtcaaaaataaacaaaaatagcttctcagcaaaaagcaatttctcaagcaatactTTTTcttggactgtctgggagtgatctgagtggggaagggaaaactgaaaactagctgttattggcagagatttGGAACTCGCTTTCTTATTAGTCTTTTAACTAATTTAcagccaaaactccatcccaccaaaacaggcagaaatttcaggcagtcttttaaAACAGCTCTTACACGAAAAGCGCATTaacataattttcacaatttcacagtattattccaaactcAATGTGCGGAAATATATATGAAACACagaaaaatcatgtttttgactgcattgggcctttaagtaCTATGAATACATTTATTAAGGGTGTCTCCTAGAAAGTGATTGCAATTTACTCATGAAATTGTCATCAATCATAGAAACAATCATAGACCACTATTACCAATGTCACTGTTGTTGGTTAGCATTCTTTGCTGTTATAATGCATATcaataacatgtttttttttaccaatatATCCACTTTTAGGACTGAATCAAAGAGCAGTCTTTATCTCATGTAATGTGTTGTGGCTCAGACACATAGATGCATGATCGCAAAGACATTTCAACTGAACAAGTGCAATAATATACTATGATTAATGAAGGACGTTGACCCTGTAAGTCGAGCGCATCAATCAGCCATTGTAAAGATAACTTTTCTACAAAACCTCTGACCATCAATTTGAGCTTTCAAGTACCTCTTTAAGTTTCAATCAAAACATCAAAACATGGAAACAAAGGTGTCCCTGTGCAAAATGTAACATGAAAAGAACGAAACTCATTAACTCATCCATCGTTCATTTTGGAACTGATCTCCCCACGTTGAATTTCTAAAACATGATTGTATTAAAAGATTTATACAAAACTTAATACATTTACATTGTTAGTAAAAAGAGTTTTATCAGCTATAATTTCATTTATAAGAAATTGCATATACCCAAACTTTTTCTATATCGATTGCATCCCATATCTAAACAAGTGATGTAATCATTGTTATACCAATATTGCTGATAAGTGGTCCTACTAAGTATTCAATAGAATTCAAATAAATTAGTAATGCTAGATTGTCTCCTTTATATTTTCCATAGCCATTGTTCGTTGGACATCTCGCTCTGTGTTTTTAACAACACAGATTACTAAGACTTTTTATTTCTAAGTAAATGGAAGTATAGTCGTTTTAGGTTATGGGAGTTGGACATCTCGCTGTGTGTTTTTAACAACACAGATTACTAAGACGTTTTATTTCCAACTAAATGAAGTATAGTCATTCTAGGTTATGGGAGTTGGACCAGTTAGCAGTTTCCGTGTCATGATGTTTAAAATGTGTCATATTTATACATGGTTTCTTCTTAAACTTGATTTAAACACAGACATTATTATTAGTGTTCACACAGACCACTGAAGACAAAGAGTTTTTCAAACATTGTTACAAAAATCAATACATTTACATCCATTAAACAATCTTCACACCAAAGGTCATTTTTGTTTTCTATGACATACTTAGAGAAAAGCTTATCTAAAAATGATTGGTCCTCACATTGTCCTCATCTGGCTCCCCACCCGTGGCACTCAGTTCTGATTGGTCCTCACATTGCCCTCATCTGGCTCCTCACCCGTGGCACTCAGTTCTGATTGGTCCTCACATTGCCCTCATCTGGCTCCCCACCCGTGGCACTCAGTTCTGATTGGTCTTCACATTGCCCTCATCTGGCACCCTACCCGTGGCACTCAGTTTTGTCCTTTTTATCAATATCGTTAAAATAATGAATGATACAAGCTTACAATTAATAAATACATATACACTAAAATGTGCATACATTAGCAGCTATAAACAGTACATCACATTATATTAGGTCATATGAAAATGTACAAAACGTGAATGTTCTTTGAAACTTTTGCCATTGGGAACTATTTTTAAAGCAAGGCAGAAAACCCATTACAATGGAGCTCAGAGCATTACAGCATaatgaataaaataaatactACGGTAAATTACAGCAGCAACAATCATAATCCATTCTCTTTTGACCTTTATTTGTTGCTTTAACATCATTTGATTTGGCCTCAGACTGGGCCTTTTGGCCAGAAGATAGGCTACTACACTTGGATGCCTTGCACCGCTTGTTTGATGTTCTCCAATAGTTCCTTGTTCTCTGGACTCTGGTATTGGTCCTGATGGGTGTACATGTCTGTCAAAGTACTCACATACGTGTCAAAGTTTTGTTCATTCATTGGCT
>TU389760
GCAACACACGTTTTATTCAGAGTAAGAGATGTTAACACCAGCATGATAAAAATCGTACAAACGTCACAATTTCAAATGAAATATCATAGCAACTTGTGATTTTAAACATATACAACAAAAATGATAGATCAACAAAAATCATGCCATGTGGTACCAAAATTAAGTTGGAAAGTTTGCAAGAGGGGgcaggggaaaggagagaaggaaataCATTTAGTATAAAATCATTTTCATCAAAGCATTACTCAAAATAAATTATAATTGTAGCAGTTTAATAAATTCATGAATTCCCAAATATTAATACGAAAATTATTCTGCATTCTAGCATGTGACATGTTAGTGTTCTGTATGTAAATAATTACAGATAAACTTTAACATTTGATATTACAATATGAACTGACTGTTGGTGAGCAGCAGATTTGTGCTTAAAATTCCCATTTCCTTTGTATCAGTAAGAATAATTGACTAAAGAAAAATAGTAGAAGCTGTCGATCTGTCTAAAGCTTTGCTATATTGGCAATAAGCTGCTGACACAAAGCTTTAGACACGGACATGAGGAGTCAAATGGAATGTGGACCTCTAGTCTAGTAGAAGTCCACATTCCACCTGTGAGATCAGGTCAATGACTATAGCACCCTCAGGTTGACTATCAAAAAGGGTTGTCTGAAGTGAACTTGACTCACGGAGCTCTGTCTCGTTGACTCCACACACAAACTTACTTCCACATATGTCTTAcgtgaatcattctctctatttaCCCATATTCATACTCGCATGAAGTGCATGCACGATAAACTGTATTAAGAACACATTTATAATCCATTAGTAGAGTCATCTTCAGCAAGTGCAAGTCGCATGGTTATGCCAATTTGTATAGGAAATTTAATTAGTAATAAGTACTTACTATGTAAGGGTAGAATACTGCAGTTGGCTGATGTTTAAAAGATAACGGCATTATAGGGGGCTGACATTGACACTTACATTGCATTATAATGGTGTTTTTAAAGGTCCAGttcagctgtttttatctcaatatcaaatcctttctgggAAACAAGTAggttactgtgattgttttcaattaaaatggtcaaaaataaacaaaaatagcttctcagcaaaaagcaatttctcaagcaatactTTTTcttggactgtctgggagtgatctgagtggggaagggaaaactgaaaactagctgttattggcagagatttGGAACTCGCTTTCTTATTAGTCTTTTAACTAATTTAcagccaaaactccatcccaccaaaacaggcagaaatttcaggcagtcttttaaAACAGCTCTTACACGAAAAGCGCATTaacataattttcacaatttcacagtattattccaaactcAATGTGCGGAAATATATATGAAACACagaaaaatcatgtttttgactgcattgggcctttaagtaCTATGAATACATTTATTAAGGGTGTCTCCTAGAAAGTGATTGCAATTTACTCATGAAATTGTCATCAATCATAGAAACAATCATAGACCACTATTACCAATGTCACTGTTGTTGGTTAGCATTCTTTGCTGTTATAATGCATATcaataacatgtttttttttaccaatatATCCACTTTTAGGACTGAATCAAAGAGCAGTCTTTATCTCATGTAATGTGTTGTGGCTCAGACACATAGATGCATGATCGCAAAGACATTTCAACTGAACAAGTGCAATAATATACTATGATTAATGAAGGACGTTGACCCTGTAAGTCGAGCGCATCAATCAGCCATTGTAAAGATAACTTTTCTACAAAACCTCTGACCATCAATTTGAGCTTTCAAGTACCTCTTTAAGTTTCAATCAAAACATCAAAACATGGAAACAAAGGTGTCCCTGTGCAAAATGTAACATGAAAAGAACGAAACTCATTAACTCATCCATCGTTCATTTTGGAACTGATCTCCCCACGTTGAATTTCTAAAACATGATTGTATTAAAAGATTTATACAAAACTTAATACATTTACATTGTTAGTAAAAAGAGTTTTATCAGCTATAATTTCATTTATAAGAAATTGCATATACCCAAACTTTTTCTATATCGATTGCATCCCATATCTAAACAAGTGATGTAATCATTGTTATACCAATATTGCTGATAAGTGGTCCTACTAAGTATTCAATAGAATTCAAATAAATTAGTAATGCTAGATTGTCTCCTTTATATTTTCCATAGCCATTGTTCGTTGGACATCTCGCTCTGTGTTTTTAACAACACAGATTACTAAGACTTTTTATTTCTAAGTAAATGGAAGTATAGTCGTTTTAGGTTATGGGAGTTGGACATCTCGCTGTGTGTTTTTAACAACACAGATTACTAAGACGTTTTATTTCCAACTAAATGAAGTATAGTCATTCTAGGTTATGGGAGTTGGACCAGTTAGCAGTTTCCGTGTCATGATGTTTAAAATGTGTCATATTTATACATGGTTTCTTCTTAAACTTGATTTAAACACAGACATTATTATTAGTGTTCACACAGACCACTGAAGACAAAGAGTTTTTCAAACATTGTTACAAAAATCAATACATTTACATCCATTAAACAATCTTCACACCAAAGGTCATTTTTGTTTTCTATGACATACTTAGAGAAAAGCTTATCTAAAAATGATTGGTCCTCACATTGTCCTCATCTGGCTCCCCACCCGTGGCACTCAGTTCTGATTGGTCCTCACATTGCCCTCATCTGGCTCCTCACCCGTGGCACTCAGTTCTGATTGGTCCTCACATTGCCCTCATCTGGCTCCCCACCCGTGGCACTCAGTTCTGATTGGTCTTCACATTGCCCTCATCTGGCACCCTACCCGTGGCACTCAGTTTTGTCCTTTTTATCAATATCGTTAAAATAATGAATGATACAAGCTTACAATTAATAAATACATATACACTAAAATGTGCATACATTAGCAGCTATAAACAGTACATCACATTATATTAGGTCATATGAAAATGTACAAAACGTGAATGTTCTTTGAAACTTTTGCCATTGGGAACTATTTTTAAAGCAAGGCAGAAAACCCATTACAATGGAGCTCAGAGCATTACAGCATaatgaataaaataaatactACGGTAAATTACAGCAGCAACAATCATAATCCATTCTCTTTTGACCTTTATTTGTTGCTTTAACATCATTTGATTTGGCCTCAGACTGGGCCTTTTGGCCAGAAGATAGGCTACTACACTTGGATGCCTTGCACCGCTTGTTTGATGTTCTCCAATAGTTCCTTGTTCTCTGGACTCTGGTATTGGTCCTGATGGGTGTACATGTCTGTCAAAGTACTCACATACGTGTCAAAGTTTTGTTCATTCATTGGCT

Function

NR:

description
PREDICTED: myelin transcription factor 1-like protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU389758 False 3459 lncRNA 0.35 2 33114504 33118054
TU389759 False 3370 lncRNA 0.35 2 33114504 33118054
TU389760 True 3370 lncRNA 0.35 3 33114504 33118054

Neighbor

gene id symbol gene type direction distance location
LOC100136136 LOC106608110 coding downstream 271447 32840152 ~ 32843057 (-)
LOC118964517 NA coding downstream 271800 32842482 ~ 32842704 (-)
LOC118964516 NA coding downstream 272434 32841846 ~ 32842070 (-)
LOC118964507 NA coding downstream 272947 32841333 ~ 32841557 (-)
LOC118964515 NA coding downstream 273884 32840396 ~ 32840620 (-)
LOC110522509 LOC106608146 coding upstream 32155 33150209 ~ 33156254 (-)
LOC110521082 LOC106608148 coding upstream 67692 33185746 ~ 33209279 (-)
LOC118964497 LOC106608148 coding upstream 101500 33219554 ~ 33241589 (-)
LOC118964467 NA coding upstream 284067 33402121 ~ 33404392 (-)
LOC110521084 dnah8 coding upstream 293003 33411057 ~ 33469426 (-)
G344418 NA non-coding downstream 3187 33095575 ~ 33111317 (-)
G344419 NA non-coding downstream 6651 33106497 ~ 33107853 (-)
G344409 NA non-coding downstream 30313 33081317 ~ 33084191 (-)
G344371 NA non-coding downstream 104574 33009506 ~ 33009930 (-)
G344329 NA non-coding downstream 125577 32924368 ~ 32988927 (-)
G344900 NA non-coding upstream 2760 33120814 ~ 33121095 (-)
G344901 NA non-coding upstream 4765 33122819 ~ 33123037 (-)
G344903 NA non-coding upstream 7673 33125727 ~ 33127735 (-)
G344904 NA non-coding upstream 11545 33129599 ~ 33130487 (-)
G344905 NA non-coding upstream 13016 33131070 ~ 33131812 (-)
G344164 NA other downstream 252400 32841256 ~ 32862104 (-)
G343300 antiprot1 other downstream 990618 32107969 ~ 32123886 (-)
G342376 NA other downstream 1882718 31189505 ~ 31294180 (-)
LOC118964463 LOC106608127 other downstream 2008374 31023759 ~ 31107906 (-)
G341017 NA other downstream 3198314 29915662 ~ 29916190 (-)
LOC110522529 LOC106608176 other upstream 632250 33749940 ~ 33940233 (-)
G345248 NA other upstream 662243 33780297 ~ 33780638 (-)
G345255 LOC106585892 other upstream 671440 33789494 ~ 33790085 (-)
LOC110522548 5nt1a other upstream 1684035 34799157 ~ 34807617 (-)
LOC110522550 LOC106571659 other upstream 1714385 34832436 ~ 34886570 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G467568 NA non-coding CI01000325 null 7596381 ~ 7599813 (-)
tiger barb (Puntius tetrazona) G138922 NA non-coding NC_056718.1 CM032087.1 15816920 ~ 16190659 (-)