G344441


Basic Information

Item Value
gene id G344441
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 33181449 ~ 33185617 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU389800
AGGCAGATTGATAAACTATGGCAAAAATACTGAAGCACATTGataaaatactaaataaataccATGATAAAGAACGTTCCAAAAAACTCTCATTTAGAAAAGAAAGGTTTACAATTCATTTCAGACAACCAAATATATAAATTAAATGTGAATAGTAACTGAATCAGCAAATGAATCATACAAAACAAACTGCAATACTGAACAGCAATGAAACATCAGAGAATACCTTCATTTTCACTACCCTGCATGCTATCTTAAGACCTTATAAAAtaacgtagacaaataaaagttTAAACAACAAAAACATGGTCAAGAGCAGAAAATAGTTCCGTTTAAATTAggcatatatttatatatttatatatgtatatttctGTACAAATAATGCATATTTGGCATTATATTCATCCTCATTATTGATATATCTAATAATTAAAAATAGTTTAAGCTAAACATCTACCTTCATATGATTTTTTTCTTCCATGTCACATTCCAATTGATTAATTCTACCCACAAGACATCAGACATTTCTCCACCATAGGTAAACATAGAATGAAAGCTGTCTCACCTCgcaaaacatttagaaaaaagagAAAATAGCACAGGTCAAGGGTGCCCTTTCTCTTCCCTGGGGGGGTTTCATTCGCTTTTAAAGGCAAACAATGCAATGACTGTCAATGTGAACAATGAACGCACATATGCCCCGAATGTCCATACAGTTGAGATACATGTAGGCCTAGTTAATAGCAGGGGAATGGGAGACCTTGTGGGCAGAATCCTCCATTCTACAATATTGGCATTAACTAAGAAACAGAGTGTGAGCAGATTGGATGACAGGTCAAATTGGAAGGTCATTTGATATAGAGGCTACAGTGCATTGTGAGTCCATTGTTTGAATGAAGCTTATTGCTAATCGGGCAGCAGGCACTCGCAGTCCATGAGGTTTAGAATGTAAAGCAGCCCTGATTCGATCAAACCTTTTTAAATAAGCCATGAGTCAATAGCATTGCCTCGAGGAAATGAAGAAAGAGCCCATTGTATTTTGTGGAAATAAAGATCAGTGATAATGATAACAATTAACTCTGTGCTCCAAATTGaatcaaatgttttatgagaagagagagacattctTACAGTGTAACTGCACTGTAAAAAATGAAGAAATATAagattgaaagaaaaaaaaaaagcaaagttTACAGGGCCTGTGGTGGTGTCAAAATACTTCAAGATAAGTTGTTGAAAAGAAAGAATTTAGGGTGCCATCTTGATGACATCTTGTGGTACTGCTGTGAAATAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatctgtttgTTTGTGCGGATTATCAGAATAAACCGATCTCTGTAaattttttacaaaaaataaagaAGTAACAAAATAATATCATCACCTTTAGTGACTCTTCCTTAAGGTTTTTAGCACAGCAGCTCACCAAACACACTAGTCCATGATGATAGAACATGAGTAATTTTCAGCTCCTAAAAGAGTTCCATACGTACAGGGCCGCAGAGCAATATATCGCAACCATTGTTGATTGATTGAGTACTGTGATATATGATACAATTTGTTACTCTAAAtgtctttgtgtatgtgtgtttagcgATTACGTCTTAAAGAGCATTATTTTCCTAAAATGCTAATATTTTCAATCACTATAATGTATCTGGAAAGCAATTCATCATGGATATGCAGTACTGTATCTATATGGACCTGAGCCACCCAGTGCTACCAGTGTGGAATGCATACTAGATGAGGGTTATGTATGTACCTAATGGAGCTTCTTTCAGAACAACCAGTCAAGACGGCCAGTAAGAGTGCGTAAACACCAAAGTTACAGAAGATAGATTGTTGAAAACGTACTGCATTGACCTCATCCATGTGCCCAACAATTCAAATCTTCCACCCTCTTATCACAATTTCCACTTTCATAGCAATCATTAAATAACGTGTCGTAATGCTTTAGAGGGCATGCCTGAAGACATGGGGATAAGATGCAGGACTGCTGCATAGAACACAGGCATGGCAAAGTGCTTTGATGGGCGTCATATACAAATACACCTATCTATCCCACTGTAACTGACTCTCAACCATGAGGTAAACCAGCTGTATGTGTGCCTGCCTGTTGTATGAAGCACTATTACACTTTTGGCAGGTGAAGTTTAGTCAATCCCTGGTTTGTGGCGACGATAATAAACCATAAGGCATTGACAACTGGAACGAGGTTACGATCTCTTAGCAAGGAGGCGGAGGAGAAACGGGGTCATCTTCACCATCTCCTATCTGATGAGAATACTCTCTGGGATGTTAGTTTTCTCTGCCGAACCCCACGTTTGCTCCTGTTCCACTGATTCAATTAGATTTTGATAACATTTTCTACGCCGCTTTCTCTGTTCCTAAATCAAAGACCATCAACGTACAAGACTGCCTGATGATAAAGTATAAACAGTGTGTACCAATCATGAAGATACCTGCATTCTATTCACACAATGTGACTAGAATCACATCCTCATATCCTAGACCTCATATCAACACGCGCAGCAGTCATACAACAGTCAATTTGATCCAACTCTAAATTGACACTAGCAATATCAATGCACTTGGATGAACAAAGCCAAGCTAGTTTTCTCCCTAACAGCCGTTTTGTGGTGAAACTACCCAAGCAACACAAGCAGTGATGGCCAAGCACTCTGCCAGGCATTGTAGTCCAACCAAAGATGTCAACCTAAGACATTCATTCACAGATTCTTATACGTCTGATTTTAAGGCACCTAAGGATTTTTCCCACCATTCCTAGTTGCCTAACTATACCCCTCCTAAGGTCATGGAAAAACAGCAGGGGACAAACGTGCTAATAGAGAATGTTTGAGATTGAGAAAGGGAAATGAATTTGCTATGAAAACCAACAATTGCCGTCATACCTATGCACCTACTTTAAAaggctatatatacacattacagTACTACACAATATGAGTAACTAAAGACTAGGAATTGATAGAGTGAAAGAAAACTTGAAAGAAAACCATAAACAATTTGCTTTGGTCTAATATCAGGTTAAATATAATCTGTATCTGTTGACATACAGTATCAGTGTGAAACTTGTTAACTGTAGTGAATAGTTACTAGCACGTCACCATAGCAGCAGTTGGTGACCCTGTGATTTGGGATCTTTCTGATGAGACCATCACAACAGGTGTGAAGGAGCTGAAGTGACATCATTTCTACTGACCAATCAGCATACTCTAATGAGTATTATTAGAGTTTTAGCATCTCTTCATCAAGCTATCAatgtctctcactttctcctgTGTACCTCACTAAGACCAGACATGGACTTGAAATCACCAGGGATGATATCACTGTACTGTTTGCTTTTACACAGCACCTACACAGCTCCTACACAGCACCTATCTCCTTTTTTTGCATTGTTAGGGGCTCTACATTCATGAACATTTTTGCTTTCCATGTGTTTAAGGCCGCCTGGTAAGTAAGTGTTTCATTGAGtttcacagcagagagagactgacgtCAGGAAATGAAATGGGAGATGCTGAGAGGTTTACTAGAAGCTATATAGGAATGAGGAAAGTTCCAGTTCATTAAACTACTTTCCACCCTTTTGAGCAAAATATCTGGCAACATATCTGACCAACTGAACTGTGGCTTACTGTGTGCTCTCATTCCAAAGCCCTCCATTAAAAGCTTTTCTTCATCGATACAATGTGGACATATAACAGATAACAGCTAATCCTTCACCACCAAGTACACCACACTAACTAACCCGAAACAAGCAAACAATCGCATCACATTCTATTGAACATTCGCAGTCAACTACTGGTGCCGGAAGCTTACAACCCTAACGTCACAATTATATGGGGATACAGGTATTATAGTTCAAATCCAAATGTGCTGTTCGTGTGGGTAAATTGATATGCTATGCCAATGATATACAGTGCAACACAAATGCCAGTATATCATGTCATCTAGTAAAAGGACAGGTTCTATGTTTTTGAAGGAAATGTAAAAGAAGATTGAACTAATAAGTTCATTGGCAGGGCGAGGGGCAAATTCTCCACTGTAGTGTTCAGTGGAGCAACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU389800 True 4134 lncRNA 0.38 2 33181449 33185617

Neighbor

gene id symbol gene type direction distance location
LOC110522508 ccr6 coding upstream 36280 33140884 ~ 33145169 (+)
LOC110522507 LOC106608145 coding upstream 43939 33119649 ~ 33137510 (+)
LOC110521081 LOC106571614 coding upstream 63387 32965207 ~ 33118062 (+)
LOC118964496 NA coding upstream 268802 32910710 ~ 32912647 (+)
LOC110520987 NA coding upstream 316318 32854057 ~ 32865131 (+)
LOC110522510 LOC106608180 coding downstream 173339 33358956 ~ 33380970 (+)
LOC110522512 LOC106568622 coding downstream 204255 33389872 ~ 33402155 (+)
LOC110522513 LOC106568623 coding downstream 218792 33404409 ~ 33405969 (+)
LOC110522514 LOC106571629 coding downstream 223496 33409113 ~ 33411055 (+)
LOC110521085 LOC100380634 coding downstream 283912 33469529 ~ 33489784 (+)
G344433 NA non-coding upstream 9179 33171425 ~ 33172270 (+)
G344426 LOC105024815 non-coding upstream 26038 33151481 ~ 33155411 (+)
G344263 NA non-coding upstream 69281 33107793 ~ 33112168 (+)
G344264 NA non-coding upstream 69612 33106695 ~ 33111837 (+)
G344261 NA non-coding upstream 76138 33104317 ~ 33105311 (+)
G344442 NA non-coding downstream 211 33185828 ~ 33188665 (+)
G344443 LOC106608148 non-coding downstream 4985 33190602 ~ 33191272 (+)
G344445 LOC106608148 non-coding downstream 7395 33193012 ~ 33193430 (+)
G344449 NA non-coding downstream 12692 33198309 ~ 33199239 (+)
G344450 NA non-coding downstream 16280 33201897 ~ 33202406 (+)
G343958 NA other upstream 477078 32694986 ~ 32704371 (+)
G342707 LOC106608120 other upstream 1395243 31785865 ~ 31786206 (+)
G342571 NA other upstream 1729973 31451133 ~ 31451476 (+)
LOC110522493 LOC106608104 other upstream 1762193 31417955 ~ 31422086 (+)
G342538 NA other upstream 1798700 31381826 ~ 31382749 (+)
G344647 NA other downstream 366510 33552127 ~ 33554003 (+)
LOC110522521 NA other downstream 399361 33584945 ~ 33586386 (+)
LOC110522536 LOC105024319 other downstream 1205356 34390869 ~ 34394175 (+)
LOC110522530 LOC106608164 other downstream 1351384 34536950 ~ 34541410 (+)

Expression


Co-expression Network