G344636 (LOC106608185)


Basic Information

Item Value
gene id G344636
gene name LOC106608185
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 33511574 ~ 33512323 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU390012
GGGCACTTGAGATCTGCATTTAAGTCTGTGTGCATCTGTCTCAGGACGGGGATGTAGAGTGGCTCCACCAGATTGACCAGGGCTCTAGGGACCTGTTTATGAAGGTAATCCAGAGACTCACGAATGTGTCGCACATAGTTCTCAGTGGAATAAAACAGAGAGCTGTGGCAGTAGTCACACATGTCATTGCCTCCAATGAACAAAGTGATCACTTTCCAGTCTTCTTGGAAATTAACAAGCTGTGTAAGGGGACATGTTCAGATAATATGAACTTGTGTATCATATCAATCTATGTGTGGTAGACAGTGGTGTTAAgtacaaatactttaaagtactacttaagtcgttttttggggtatctgtacttgac
>TU390011
agagagagagagagagagagagagagagagagagagagagagagaatgtttttCAAATTGAAAAAAGTAATTGAAAACAGAGGAAAGCTTGTGCTATCTGATCTGATCTGTAAATGCAAGAAGGTGGAAAAGGGACAAATTAAGAGAAAACTGTGACACGCCTTCAGCTCCTACCTGTTTATGAAGGTAATCCAGAGACTCACGAATGTGTCGCACATAGTTCTCAGTGGAATAAAACAGAGAGCTGTGGCAGTAGTCACACATGTCATTGCCTCCAATGAACAAAGTGATCACTTTCCAGTCTTCTTGGAAATTAACAAGCTGTGTAAGGGGACATGTTCAGATAATATGAACTTGTGTATCATATCAATCTATGTGTGGTAGACAGTGGTGTTAAgtacaaatactttaaagtactacttaagtcgttttttggggtatctgtacttgac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU390012 False 370 lncRNA 0.42 3 33511574 33512323
TU390011 True 452 lncRNA 0.39 2 33511733 33512323

Neighbor

gene id symbol gene type direction distance location
LOC110521085 LOC100380634 coding upstream 35803 33469529 ~ 33489784 (+)
LOC110522514 LOC106571629 coding upstream 100519 33409113 ~ 33411055 (+)
LOC110522513 LOC106568623 coding upstream 105605 33404409 ~ 33405969 (+)
LOC110522512 LOC106568622 coding upstream 109419 33389872 ~ 33402155 (+)
LOC110522510 LOC106608180 coding upstream 130604 33358956 ~ 33380970 (+)
LOC110522521 NA coding downstream 72622 33584945 ~ 33586386 (+)
LOC110522523 LOC106608181 coding downstream 120867 33633190 ~ 33636494 (+)
LOC110522524 LOC106608181 coding downstream 132905 33645228 ~ 33647432 (+)
LOC110522526 LOC106608180 coding downstream 141737 33654060 ~ 33656575 (+)
LOC110522527 LOC106608180 coding downstream 156849 33669172 ~ 33673911 (+)
G344606 NA non-coding upstream 68489 33442863 ~ 33443085 (+)
G344605 NA non-coding upstream 71757 33439535 ~ 33439817 (+)
G344589 NA non-coding upstream 88493 33422762 ~ 33423081 (+)
G344588 NA non-coding upstream 88961 33422303 ~ 33422613 (+)
G344587 NA non-coding upstream 90198 33421144 ~ 33421376 (+)
G344638 LOC106608185 non-coding downstream 4157 33516480 ~ 33519692 (+)
G344641 NA non-coding downstream 13018 33525341 ~ 33527572 (+)
G344650 NA non-coding downstream 21993 33534316 ~ 33536262 (+)
G344659 NA non-coding downstream 30506 33542829 ~ 33543028 (+)
G344647 NA non-coding downstream 39804 33552127 ~ 33554003 (+)
G343958 NA other upstream 807203 32694986 ~ 32704371 (+)
G342707 LOC106608120 other upstream 1725368 31785865 ~ 31786206 (+)
G342571 NA other upstream 2060098 31451133 ~ 31451476 (+)
LOC110522493 LOC106608104 other upstream 2092318 31417955 ~ 31422086 (+)
LOC110522536 LOC105024319 other downstream 878650 34390869 ~ 34394175 (+)
LOC110522530 LOC106608164 other downstream 1024678 34536950 ~ 34541410 (+)
LOC110522546 LOC106608201 other downstream 1308119 34807607 ~ 34831281 (+)

Expression


Co-expression Network