G344740 (LOC106608176)


Basic Information

Item Value
gene id G344740
gene name LOC106608176
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 33748140 ~ 33752828 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU390123
AAAAACAATATGTTTGACCACAGAAACATTGTCTACAACTCCAAATGAGAAATATAAATGGTTGTACTGCAAATGTACAGTGAGGCACCTCTTTATTTCTGTATGCCTACCAAGAAAATAAAGACACTAGTGTACAGCTTTTGTTCATTCTCcatcaattatatatatatataaaaaagtcaatatacagagtcaatgtacagaTGCAGTTGATCCAGAATGTCACAAAAAAGTCATTCAGACAACACAATGTGAGGAAAGACAGATAGTGTATAAGGTTCTTAATGGGCCCATGAGTTTGTCCTCGGTAAACATGCAAGTTGTACACGTTACAGAAAAGCCAACAACTTCAGCATAGTTGAGAGCCACTTTGCACTGTACATTTATGGTACCTGTCTATTTATGCTACCAAACAAAAGAAAATCAAGTTTGATAATTCCTAGACACAGTTTACTATGAATTTCCAGTCCATTTCTCATGCCAATAACTGGTGAGGGAGGCAAGGTTTCTGCTTACCCTCAAATGTCAAACATTTTAGGTGATGAGATCCAGATACATTACACAGGTAAGTGTATCTAAGTACACTGCTGTTCAAaagcttggggtcacttagaaatgtccttgtttttgaaacaaaagcaatttttttgtctattaaaataacatcaaattgatcagaaatacagtgtagacattgttaatgttgtaactgactattgtagctggaaacagacgatttttaatggaatatctacataggcgtacagaggcccattatcagcaaccatcactcctgtgttccaatggcacgttgtgtaagctaatccaagtttaccattttaaaaggctaaatgatcactaaaaaacccttttgcaattatgttagcacagctgaaaactgtcgtgCGGATTAACGAAGCAATAAgaatggccttctttagactagttgagtatcttgagcatcagtatttgtgggtttgattacaggctcaaaatggccagaaacaaaaacctttttctgaaactcgtcagtctattcttgttctgagaaatgaaggctatttcatgtgataaattgccaagaaactgaagatctcgtacaatgccgtgtactactcccttcacagaacagcgcaaactgtctctaaccagaatagaaagaggagtgggaggccccggtgcacaactgagcaagaggacaagtacagtagaatgtcaagtttaagaaacagacacatcacatgtcctcaactggcagcttcattaaatagtacccacacaacaccagtctcaacgtcaacagtgaagatgcgactccagactgctggccttctaggcagagttgcaaagaaaaagccatatctcagacttgccaatgaaaagaaaagattaagatgggcaaaagaacacagacaatggacagaggaactctgcctagaaggccagcatcccggagtcgcctcttcactgtgactggtgttttgcgggtactatttaatgaatctgccagttgaggacttgtgaggcgtcagtttctcaaactagacactctaatgtacttgtcctcttgctcagttgtggactggggcctcccactcctctttctattctggttagagacagtttgcgctgttctgtgaagggagtagtacacagagttgtacgagatcttcagtttcttggcaatttcttgcatggaatagccttcatttctcagaacaagaatagactgacgagtttcagaagaaaggtttttgtttctggccattttgagcctgtaatcaaacccacaaatgctgatgctccagatactcaactagtctaaaaaaggccagttgtattgcttctttaatcagaacagcagttttcagctgcgctaacataattgcaaaagggctttctaatgatcacttttaaaattataagcttggattagctaacacaacattccattggaacacaggagtgatggttgctgataatgggcctctgtacgcagatatatgtagatattccataaaaaatctgccgtttccagctacaatagtcggttacaacattaacaatgtctaacaaggtctacactgtatttttgatcaatttgatgttattttaatgaacaaaaaattagattttctttcaaaaacaaggaactttctaagtgaccccaaacttttgaatggtagtgcacATGAAAAAGTAAAAATGTTTCTTGGAATTGGAGAAGGATGCTTGTCTCTCAAAGATTGAGCATGTTGATCTGCAGTTTTTCTGAGGGCTTTATCTTTCTGTGCAAGAGAGGGTAAACTCCTGGTGGTTGTTAGCTCTATACTGGGTTAATTGATTTAGAGGCCAACAGAGGCCATGTTCTTTTGCTGAAACTAATCATAGGACTCTCCTCTAATGAACCTTTCAAGTGACATCACGATAACAGTTACATTTTCACTTAGGACCTTACCCATTTCACATTGCTATCTTAAAAAGAAAATATTTCATGATTTTGAGGATGAATTGTTTGCTCGCTTTATACATGAATACAACTTGATAGGAACCAGATATGGCATTATTTAATGACGCCTCAAATAAACATTCTGTATACAAAGTTAAAATATTCAAATACAGGGTTTCATGAAATAATttcatatatacatttttttatgatgAACTAAATTGCCTATATAAAGTGTACATATACACAGTACCATTCAGTCAGAATGGGTTAAGAAACGAATGGTTCTGCAGATATAAAAAAATAAGGATGGATATACggtcaggtccataattattggcacccttgttAAAGAGGAACAGAAAATAAATCATACAAACTGCAtgctaattattattatttttttatcataTTATTTTACACTCAGGGAAAGGGCTTTTGTTTAATAAGTAATAAAACAAATCCAAGAAAGATAGGGGTTAAATGTATTGTCACCGCTGTTTTAAGTACTAcagcaccctccccttgcgaGGATAACAGCACGGAGtctttttctcaaatgttttatgagattggagaatacattgggagggatcttagatcgttcctccatacagaatctttccagatccttggcATCCTTCGTCTGTGCTTATAGaatgccctcttcaattcaaaccgcaggttttcaatggggttcaagtggaggctgagatggccattgcaaaatgttgattttgtggtcaataaACAATTTCTTTGTAGATTTTGATGTGCGCTgtggttattgtcttgctggaagatccagtTACGTCAAAGTGTCTCCTGGCAGAGGcaaaccaggtttttggctacaATCTTCTGGTAATTGGTAAAGTTCACGATGcggttgaccttaacaagggccacaGGACCAGTGGATACAAAAtggccccataacatcaaagatgcaTCATCATATTTTACCATAGGTATGAGGAACTTTTATGCATATGCTTCAGTTTTTTAGACCAAACCGACCTCTGGTGTACTTaaccaaagagctctattttgaTGTcacctctttctctgagcaaatgTATTAGTACAAAATAATATGTCTTTTTTTTTGCATACACTATAGCTCAGTATTTCTATTATTTATTTTGTGCAGTCTTTTTAGTTCatatttatcaagggtgccaatcattttggatCTGACAGTATATTGAGGTTTTTCATAATGCAAATGTTGAAGTCAGAGCCCCGTCGTGTACAGAGGGGAAGAACAGTATTAGACAATGTGTGTTTGATCagcaaaataaaacatgtaaaaacaTGAAATTCATTATATATTTCATATTCACTTACAACAGTTTTAGTCCAGAGCCATGCATGGCCCATCATCTCAGCAACAGTAACAAGATGGACTTTCAGTGCCAATTTACAAGTCAACAAATACAGTGATTTGTTTCACGTTCCTTGTGTCAGAGAAACCATGGCCCTCCTCAGGAACAACAGGCCTGCTTCCCATTTCCTAGGTTTCATTGCATGCCTTACGTGTAGTTTGTAGTTGACCATTACTGTGCATTCCTCCTCCCcatgtagagaacacacacatacaaacacaaaacaacCTCACTCCACGAATCAGCTCCATCCAACAAGCGTCGTTAGCTGACTTACCCACTTGGGGGAACTTTGTACATATCTGTCACAAAAATGGAGCATCCACAATAGATGAACATGAATGAATTCCATGCAGGACGAGGAGGGAGGGGGCATGGACTTCTCCTCCAGCCTGAAGGTCTATCAGAACTGAGGCGTATTGCTACCTCTCTGGGGCAGTGTTTTAGAAGACACAAAGCAAGTCCTCATCTCTCCTAGACAGTACTCTCCATGACCCACTCTTGGCTGTCGAAGGTCCCCTTGCTCCCCCCCATATCCCCTTCCTCATCACACTGTAGCAGCATGCCGTTCACAGACAGGCTCCTCTTAGTCCAGATGTTGCTGATGCGCCGTGGGTAACTGCACACCGGCGTTGTGGCTGTGGAGGTGCTAGAGGCCATCGCTTGGTCTGTTTGTTGATCTGTATCCATACAGTCCCCCATGTCAAACGACTGGCTCCTTTTTGGTTTGGAGTCATGAGACAGCATGAGCAACCGGCTCAGCCGCGAGTCCATTGTCCGGCCCAGTAGGGGCTCCCTGTCCGTGTGGGGCCTATCGCCACCCGCCACCGGGGTGCTACTGCTGGATGAGGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU390123 True 4689 lncRNA 0.40 1 33748140 33752828

Neighbor

gene id symbol gene type direction distance location
LOC110522527 LOC106608180 coding upstream 74229 33669172 ~ 33673911 (+)
LOC110522526 LOC106608180 coding upstream 91565 33654060 ~ 33656575 (+)
LOC110522524 LOC106608181 coding upstream 100708 33645228 ~ 33647432 (+)
LOC110522523 LOC106608181 coding upstream 111646 33633190 ~ 33636494 (+)
LOC110522521 NA coding upstream 161754 33584945 ~ 33586386 (+)
LOC110522531 LOC106608192 coding downstream 377020 34129848 ~ 34133896 (+)
LOC110522532 LOC106608175 coding downstream 415422 34168250 ~ 34200246 (+)
LOC110520988 LOC106571729 coding downstream 473625 34226453 ~ 34229272 (+)
LOC110522534 LOC106608173 coding downstream 565685 34318513 ~ 34338873 (+)
LOC110522535 LOC106608172 coding downstream 604262 34357090 ~ 34364255 (+)
G344692 NA non-coding upstream 118129 33629669 ~ 33630011 (+)
G344685 NA non-coding upstream 129900 33617941 ~ 33618240 (+)
G344679 LOC100194703 non-coding upstream 136317 33611516 ~ 33611823 (+)
G344673 NA non-coding upstream 147543 33600073 ~ 33600597 (+)
G344670 NA non-coding upstream 152131 33593278 ~ 33596009 (+)
G344741 NA non-coding downstream 1066 33753894 ~ 33754145 (+)
G344743 NA non-coding downstream 3109 33755937 ~ 33756163 (+)
G344750 LOC106608176 non-coding downstream 11205 33764033 ~ 33764286 (+)
G344751 NA non-coding downstream 24718 33777546 ~ 33777773 (+)
G344753 NA non-coding downstream 26922 33779750 ~ 33780064 (+)
G344647 NA other upstream 194137 33552127 ~ 33554003 (+)
LOC110521085 LOC100380634 other upstream 258356 33469529 ~ 33489784 (+)
G343958 NA other upstream 1043769 32694986 ~ 32704371 (+)
G342707 LOC106608120 other upstream 1961934 31785865 ~ 31786206 (+)
LOC110522536 LOC105024319 other downstream 638145 34390869 ~ 34394175 (+)
LOC110522530 LOC106608164 other downstream 784173 34536950 ~ 34541410 (+)
LOC110522546 LOC106608201 other downstream 1067614 34807607 ~ 34831281 (+)
G346334 NA other downstream 1321111 35073939 ~ 35074338 (+)
G347151 NA other downstream 2080541 35833369 ~ 35833844 (+)

Expression


Co-expression Network