G345688


Basic Information

Item Value
gene id G345688
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 34439083 ~ 34441745 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU391172
catttgctccgttccatcCGTTATAAGCCGTCCCCTCAGCAGCCGCCACTGTTCCCTAGGGTACAGTACTTCATTTTGTCTTCAATTACAACTCTATGCGAAATTAAGAGAAGACATCGATGTCACTTACACGTTATGGCACATGAATGGGTGAATTGTATCCTAAGGACGATGAACCTATCATCTCTATAAGTGTAACAGTGacaacatcccactgggcacacactggttgaatcaatgttgttacCACggcatttcaatgaaattacgttgaaccaacgtggaatagacgttgaattgacgtctgtgcccagtgggacaaCATGTAAACAAGGATATGCCGAACCAAGGAGAGAACCATGGGTAAGACTCACTAAGAGGTTTCTCAATACCCTTTCATACTACAGAACTAAACTATGCTGTGTTGTACTGGCCTGGTCTGGTTATGCATCCGCCATAGCTGTTAGAACCATGCtagaaaggacaatgtgaaaataaaatatcTGTGCCAGCACAGTTTGATTTGGATCGGCCCTATAGTGGGAACCAGGTGTTAGAGCAAAGGCATGGGGGTGACAGAGTAGAATACCAAGGAATCTAACAGTCTGATCTAACAAGGGAGGCGTTCAAACACATCTGAGGAGAAATGAAATAGCTAACATTCACAAGACAGTAAAAAGTCATCCTAACAGAtactgtgtttaaaaaaaaaaactctgctgTGTTTACACAaatcatataaaaaaaaaaactcctgaTGGCAAGCTTTATTCTGGCAGAGATCTGATGTAAGTGATGTCATTCGATGTTAGTGTAATTACTTTGCTAAAAGCTTTTAACAAATGAGCCTGCGTGCTGTAATCCCTCACTAACAGCAAGACAtgttttaaacctttatttaactaggcaagtcagttaataacaaattcttatttacaatgacggccaaacccggacaacgctgggccaattgtgcggcacCCTatggggactcccaatcacggccggatgtgattcagcctggattcaaaccagggactgtagtgtcaggtcttgagatgcagtgccttagaccgctgctccactctggagCCCAAGCAAAGCATATTCCTCCCTGTCTATGTACATACCGCATGCTATGTTTTCATTTTGACCCACATCATTATTGATTCTAATAAAGTATATTGTATTAGTACAGTTTATTGTCCTGTCCTCTCCAATGCAACTCTCTTTAGTTACTTGGatgtaaataaaacatgttgCATGGGTCCTTCATGCCTGTGTTCCTCTTGTTTTACTGATATGTTGTCTGTTTGTTGCCTGACTAGAAAGTTACTGCGTTATGTGCAACATGTCAGCGTTAGTAGTACAAACGGATATAGTAGTGCTCTGTTGGATCAAGACAATTCACAGCAGAACTAAAACAATTCTGTGGTCTTCTGATGGATGGATCAGCCAAGCGACCGAACCTGCCATTAGGTTATGAGACATAAGCAAATAACTGTATTTGGCAACTTTGCTCAAGTTGTCTACTCAACATAAACATCTTTCCATCATCCCTTATAGAAATgttcagttagttagttagtgtaaACATGGTACCTCAACATATCATCATCCTAGCAGTACAGGTAGTCTATAGAGCTACATTCTATTTACTCTACCACATGCTCGGGTCCAATGACCTCATCCAAGCAGCATTAACCCTAGCCTGGTCAAACCAGACTGAACGGAAAAAACTATGTTTAACCAGGCTACTTCAAACCTTCTGCAACAATCCACTTTGATCCACCTAACGGGTTGAAATCAAATGAAACCAAATGGGTTTCAATGTTCTGAGGGATGGATTTGGATGTAACGCTCTCAACAGGCTAAACATCTAAATGAGTGTTGATGCTGGGAGTTGTGAGAGGAGAGGTTGGGCTAGAGGCATGGCTACAGTTTCAGGAGTCACACAAACCCACTCAAAGCTGTGTCCGACACCAACACAGTCAATGCCAAGTCCAAGATAATGAACACTGACAGATGCTTGGTCCTAGAGGCATCATTTAGTCACAGGAAAGAGGAACAGTCTTCGCTGAGGTTGGTGCGTGCCTGGGGGGTAAAGTCTTCAATAAACCCACAGGGTGGGTATATGAGGAACAGTCACTATTAGGACCATAGGGTAAAGGGTACGGTCATTGACGGGATGACCACAGGCTGGCCACAGGCTGTGAAGTGGTCTCTGATACACAGTTATGTCTAATCGGTCTGGTCGCAAATCTTTGTGTGTACACTGGGATACTATTACATGTGTTGAGGGAAAGGGAaaaatagtgtgtgtgtctccctctgtgtgtgtgcgtgtctctgtgtgtgtgtgtgtgtgtctctctctctctgtgtgtgtgtgtgtgttttggctgTGGGTTAGGATAACTCTGGGTTATCCTCAGAGAGCTGAGTGGGATACCCCTGTCTATACATGAAGGTGAGAAGAAACAGTGCCACGTCGTGTGAACACCAATAGGCTGTGTGCGAGGTCACCGCCGACCAATAGCGGCTCTCCACCATGCCTTCTCGCAGCTCAAAGTCAATGCGCCTCTCCAACTCC

Function

NR:

description
phospholipase DDHD1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU391172 True 2593 lncRNA 0.44 2 34439083 34441745

Neighbor

gene id symbol gene type direction distance location
LOC110522537 LOC106608171 coding upstream 41379 34394320 ~ 34397704 (+)
LOC110522536 LOC105024319 coding upstream 44908 34390869 ~ 34394175 (+)
LOC110522535 LOC106608172 coding upstream 74828 34357090 ~ 34364255 (+)
LOC110522534 LOC106608173 coding upstream 100210 34318513 ~ 34338873 (+)
LOC110520988 LOC106571729 coding upstream 209811 34226453 ~ 34229272 (+)
LOC110522540 LOC106608169 coding downstream 13447 34455192 ~ 34459207 (+)
LOC110522530 LOC106608164 coding downstream 95205 34536950 ~ 34541410 (+)
LOC110522544 LOC106571654 coding downstream 178155 34619900 ~ 34627191 (+)
rdh14b rdh14 coding downstream 185620 34627365 ~ 34630001 (+)
LOC110522546 LOC106608201 coding downstream 365862 34807607 ~ 34831281 (+)
G345682 NA non-coding upstream 632 34436713 ~ 34438451 (+)
G345658 NA non-coding upstream 73411 34365162 ~ 34365672 (+)
G345648 NA non-coding upstream 95433 34343435 ~ 34343650 (+)
G345647 NA non-coding upstream 95700 34343174 ~ 34343383 (+)
G345634 NA non-coding upstream 132557 34300560 ~ 34306526 (+)
G345967 NA non-coding downstream 122038 34563783 ~ 34564321 (+)
G345968 NA non-coding downstream 124323 34566068 ~ 34566283 (+)
G346002 NA non-coding downstream 175053 34616798 ~ 34617208 (+)
G346003 NA non-coding downstream 175593 34617338 ~ 34617753 (+)
G346040 NA non-coding downstream 241120 34682865 ~ 34683139 (+)
LOC110522521 NA other upstream 852772 33584945 ~ 33586386 (+)
G344647 NA other upstream 885080 33552127 ~ 33554003 (+)
LOC110521085 LOC100380634 other upstream 949299 33469529 ~ 33489784 (+)
G343958 NA other upstream 1734712 32694986 ~ 32704371 (+)
G346334 NA other downstream 632194 35073939 ~ 35074338 (+)
G347151 NA other downstream 1391624 35833369 ~ 35833844 (+)
G347178 NA other downstream 1466501 35908246 ~ 35908451 (+)

Expression


Co-expression Network