G346002


Basic Information

Item Value
gene id G346002
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 34616798 ~ 34617208 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU391526
aattggcttcctatttcgcaacaaagcatccttcactcatgctgccaaacatacccttgtaaaactgaccatcctaccaatcctcgacttcggcgatgccatttacaaaatagcctccaataccctactcaacaaattggatgcagtctatcacagtgcaatccgttttgtcatcaaagccccatatactacccaccattgtgacctgtacgctctcgttggctggccctcgcttcatactcgtcgccaaacccactggctccatgtcatctacaagaccctgctaggtaaagtccccccttatctcagctcgctggtcaccatagcatcacccacctgtagcacacgctccagcaggtatatctctctggtcacccccaaaaccaattttttctttggccgcctctcctt
>TU391527
aattggcttcctatttcgcaacaaagcatccttcactcatgctgccaaacatacccttgtaaaactgaccatcctaccaatcctcgacttcggcgatgccatttacaaaatagcctccaataccctactcaacaaattggatgcagtctatcacagtgcaatccgttttgtcatcaaagccccatatactacccaccattgtgacctgtacgctctcgttggctggccctcgcttcatactcgtcgccaaacccactggctccatgtcat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU391526 False 411 lncRNA 0.49 1 34616798 34617208
TU391527 True 270 lncRNA 0.47 1 34616798 34617067

Neighbor

gene id symbol gene type direction distance location
LOC110522530 LOC106608164 coding upstream 75388 34536950 ~ 34541410 (+)
LOC110522540 LOC106608169 coding upstream 157591 34455192 ~ 34459207 (+)
LOC110522537 LOC106608171 coding upstream 219094 34394320 ~ 34397704 (+)
LOC110522536 LOC105024319 coding upstream 222623 34390869 ~ 34394175 (+)
LOC110522535 LOC106608172 coding upstream 252543 34357090 ~ 34364255 (+)
LOC110522544 LOC106571654 coding downstream 2692 34619900 ~ 34627191 (+)
rdh14b rdh14 coding downstream 10157 34627365 ~ 34630001 (+)
LOC110522546 LOC106608201 coding downstream 190399 34807607 ~ 34831281 (+)
LOC110522552 LOC106608197 coding downstream 275921 34893129 ~ 34900917 (+)
LOC110521087 LOC106608196 coding downstream 285642 34902850 ~ 34916426 (+)
G345968 NA non-coding upstream 50515 34566068 ~ 34566283 (+)
G345967 NA non-coding upstream 52477 34563783 ~ 34564321 (+)
G345681 stxb6 non-coding upstream 91959 34429810 ~ 34524839 (+)
G345688 NA non-coding upstream 175053 34439083 ~ 34441745 (+)
G345682 NA non-coding upstream 178347 34436713 ~ 34438451 (+)
G346003 NA non-coding downstream 130 34617338 ~ 34617753 (+)
G346040 NA non-coding downstream 65657 34682865 ~ 34683139 (+)
G346054 NA non-coding downstream 95410 34712618 ~ 34713059 (+)
G346175 NA non-coding downstream 110485 34727693 ~ 34727932 (+)
G346186 5nt1a non-coding downstream 144665 34761873 ~ 34800749 (+)
LOC110522521 NA other upstream 1030487 33584945 ~ 33586386 (+)
G344647 NA other upstream 1062795 33552127 ~ 33554003 (+)
LOC110521085 LOC100380634 other upstream 1127014 33469529 ~ 33489784 (+)
G346334 NA other downstream 456731 35073939 ~ 35074338 (+)
G347151 NA other downstream 1216161 35833369 ~ 35833844 (+)
G347178 NA other downstream 1291038 35908246 ~ 35908451 (+)
LOC110522562 LOC105017690 other downstream 1421958 36039096 ~ 36123362 (+)

Expression


Co-expression Network