G346186 (5nt1a)


Basic Information

Item Value
gene id G346186
gene name 5nt1a
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 34761873 ~ 34800749 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU391727
GATATTCTTAAAAATAGACATTTGAATCATTCCTAAAATATGTGTTAACACACAAAGAAGAAAAAATAGAAATAGTTAATGTTCAACATACAATATAGACTGTccttatacatactgtatattcaacTGTAAACTATATGTAACAAAATACCCGACATGTAACATTTTACTAGTGGAACAGGTATGGTGAACTAGCTTGCTTGAGGTTTTGATATAACATATAGCCTAATTCAGCTTTACTAAGAGCAAGGTGAGGTTTTGATATAACATATAGCCTAATTCAGCTTTACTAAGAGCAAGGTGAGGTTTCTTGCAtctaaaaacaaatatttttaaatggAATAAGAAAATGGAATAGACTAGAACAATGCATGGATAGcaaaaataatataattattgAATATTAAAGTGTTGCTTTTAAAGTTTAGTACATTTCAGACAATAGTTTTTAAAGTCGTGCTCACGAGCCAAAATGGGTCCCCAAAAAATATGCAcaattgtgtactacatcatccattttgtatgatatgtcaTGTcctgcaaaatattttttttaaatgtttgcaattCGAAAATTTGACGAATTTCAATTCGTATAATATGGTACGAGTTTGTAAGTGCTTAAGATCCCGACTGCATCTAAgtgtaaataataaataaataatgtgttAATGTCTGTTTTGTATGGTGTGCAGTGAAACCAAAACGCATATATTTTTTCAGCGCTTCATATCAATAACCATTCTACCTTGTTAGTGCACTAGAGTGCACATATCTAAAGATATAAAATACACTTTTCTAAATATACTTTCATGTGTAAAATTTGAACACactgacatacattttcattaaaaaaactaCATATTTGACCAAATACTATTAAAGACTACAATGTGATGGTGATGAGGATTGTAGGAAAGTGATCCTTTCTCTCCTCATGACAGAGAACATTAGGTGACATTGGTCCCTGATGTGAGTATTACATCTACAGTCCTAAACGATGTGTTTTTTTCTCCTGTTGATACAACATTCTCTGATAAAGATGTTTGTAATAATGTGTAAAAAAGAGAAATAATATAAAATTCTGATAAACAATAAAGGTCCTACAGCTGATGACAGGGTTGTGTGCAACTAAGCATTTGCATAACGTATGATATctccccaccactaggaggctcTTTACTTCTTGTCTTTGACATCTTTGTCAGGCTGCTCAATAAGTTCCCCCTTGTGATACTTCTGTCCGATCCCATAAGGCACGTGTGCAGCGATGGTCCCCAGCTCCTTGGCTCCCTCGATGTGGAACATCTGGTCGTCAAAGAATATGTGGGGCCGGATCTTCTGCAGGAGAGGCCCTTTGGGGGCCCCGGCTAGGAACAGGGCTTCGTCGATCTCCAGGCCCCAGCTCCTGAGGGTCTTGAGGACACGGGCCCCTGAGCTGGCTGCACTGCGGGCTGTTACCAGGTAGGTACGAATGGGGCAGGTCATACGCTCGTTCTTGGCGTAGAACTTTCTCTGGAGCTTCCCCAGCGCCTCCAGGAAACACTTCAAG

Function

NR:

description
cytosolic 5'-nucleotidase 1A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU391727 True 1552 lncRNA 0.37 2 34761873 34800749

Neighbor

gene id symbol gene type direction distance location
rdh14b rdh14 coding upstream 131872 34627365 ~ 34630001 (+)
LOC110522544 LOC106571654 coding upstream 134682 34619900 ~ 34627191 (+)
LOC110522530 LOC106608164 coding upstream 220463 34536950 ~ 34541410 (+)
LOC110522540 LOC106608169 coding upstream 302666 34455192 ~ 34459207 (+)
LOC110522537 LOC106608171 coding upstream 364169 34394320 ~ 34397704 (+)
LOC110522546 LOC106608201 coding downstream 6858 34807607 ~ 34831281 (+)
LOC110522552 LOC106608197 coding downstream 92380 34893129 ~ 34900917 (+)
LOC110521087 LOC106608196 coding downstream 102101 34902850 ~ 34916426 (+)
LOC110522553 LOC106608207 coding downstream 129501 34930250 ~ 34970463 (+)
LOC110521089 LOC106608211 coding downstream 448868 35249617 ~ 35418424 (+)
G346175 NA non-coding upstream 33941 34727693 ~ 34727932 (+)
G346054 NA non-coding upstream 48814 34712618 ~ 34713059 (+)
G346040 NA non-coding upstream 78734 34682865 ~ 34683139 (+)
G346003 NA non-coding upstream 144120 34617338 ~ 34617753 (+)
G346002 NA non-coding upstream 144665 34616798 ~ 34617208 (+)
G346222 NA non-coding downstream 12667 34813416 ~ 34813658 (+)
G346227 NA non-coding downstream 31702 34832451 ~ 34837010 (+)
G346229 NA non-coding downstream 38117 34838866 ~ 34840441 (+)
G346264 NA non-coding downstream 124974 34925723 ~ 34926041 (+)
G346294 NA non-coding downstream 186646 34987395 ~ 34988003 (+)
LOC110522536 LOC105024319 other upstream 369610 34390869 ~ 34394175 (+)
LOC110522521 NA other upstream 1175562 33584945 ~ 33586386 (+)
G344647 NA other upstream 1207870 33552127 ~ 33554003 (+)
LOC110521085 LOC100380634 other upstream 1272089 33469529 ~ 33489784 (+)
G346334 NA other downstream 273190 35073939 ~ 35074338 (+)
G347151 NA other downstream 1032620 35833369 ~ 35833844 (+)
G347178 NA other downstream 1107497 35908246 ~ 35908451 (+)
LOC110522562 LOC105017690 other downstream 1238417 36039096 ~ 36123362 (+)

Expression


Co-expression Network