G347233


Basic Information

Item Value
gene id G347233
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 36125408 ~ 36128946 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU392869
TGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGTAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGTAGAGTCTGCCCTGGCATGTCAAAGACAATGTGTTGAAGAGTCTGCCCTGGCATGACAAGGACAATGTGTTGAAGAGTCTACCCTGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGTAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGTAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGTAGAGTCTGCCCTGGCATGTCAAAGACAATGTGTTGAAGAGTCTGCCCTGGCATGACAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGTAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGCTTTAGTCACCACCTTCTCATCCAGTGACTCACAcagtgtctgcgtcccaaattgcaccctattccctttatacactgagtataccaaacattaggaacaccttcctgatattgacTTGCACCCTCTCCCCTCAtgacagcctcaattcatcagggcattggactctacaagatgtagaaacgttccacagggatgctggcccacgttgactacaatgcttcccacagttgtgtcgagttggctggatgttctttggttggtggaccattattgatacacacgggaaactgttgagcgtgaaaaacccagcagcgttgcagttcttgacaagaaacgttgcgcctggcacctactaccataccccattccaaggcaattaaatattttgtcttgcccattcaccctctgaatgacacac
>TU392870
TGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGTAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGTAGAGTCTGCCCTGGCATGTCAAAGACAATGTGTTGAAGAGTCTGCCCTGGCATGACAAGGACAATGTGTTGAAGAGTCTACCCTGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGTAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGCTTTAGTCACCACCTTCTCATCCAGTGACTCACAcagtgtctgcgtcccaaattgcaccctattccctttatacactgagtataccaaacattaggaacaccttcctgatattgacTTGCACCCTCTCCCCTCAtgacagcctcaattcatcagggcattggactctacaagatgtagaaacgttccacagggatgctggcccacgttgactacaatgcttcccacagttgtgtcgagttggctggatgttctttggttggtggaccattattgatacacacgggaaactgttgagcgtgaaaaacccagcagcgttgcagttcttgacaagaaacgttgcgcctggcacctactaccataccccattccaaggcaattaaatattttgtcttgcccattcaccctctgaatgacacac
>TU392871
TGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGTAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGTAGAGTCTGCCCTGGCATGTCAAAGACAATGTGTTGAAGAGTCTGCCCTGGCATGACAAGGACAATGTGTTGAAGAGTCTACCCTGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGTAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGTAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGTAGAGTCTGCCCTGGCATGTCAAAGACAATGTGTTGAAGAGTCTGCCCTGGCATGACAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGTAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGACAAGGACAATGTGTTGTAGAGTCTGACCTGGCATGTCAAGGACAATGTGTTGTAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGACAAGGACAATGTGTTGTAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGTAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTGGAAGAGTCTGCCTTGGCATGTCAAGGACAATGTGTTGCTTTAGTCACCACCTTCTCATCCAGTGACTCACAcagtgtctgcgtcccaaattgcaccctattccctttatacactgagtataccaaacattaggaacaccttcctgatattgacTTGCACCCTCTCCCCTCAtgacagcctcaattcatcagggcattggactctacaagatgtagaaacgttccacagggatgctggcccacgttgactacaatgcttcccacagttgtgtcgagttggctggatgttctttggttggtggaccattattgatacacacgggaaactgttgagcgtgaaaaacccagcagcgttgcagttcttgacaagaaacgttgcgcctggcacctactaccataccccattccaaggcaattaaatattttgtcttgcccattcaccctctgaatgacacac
>TU392868
CTGCCCTGGCATGACAAGGACAATGTGTTGTAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGTAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTGGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTGGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGTAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGTAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAATGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGAAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGTAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGCTTTAGTCACCACCTTCTCATCCAGTGACTCACAcagtgtctgcgtcccaaattgcaccctattccctttatacactgagtataccaaacattaggaacaccttcctgatattgacTTGCACCCTCTCCCCTCAtgacagcctcaattcatcagggcattggactctacaagatgtagaaacgttccacagggatgctggcccacgttgactacaatgcttcccacagttgtgtcgagttggctggatgttctttggttggtggaccattattgatacacacgggaaactgttgagcgtgaaaaacccagcagcgttgcagttcttgacaagaaacgttgcgcctggcacctactaccataccccattccaaggcaattaaatattttgtcttgcccattcaccctctgaatgacacac
>TU392872
CTGCCCTGGCATGACAAGGACAATGTGTTGTAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTTGTAGAGTCTGCCCTGGCATGTCAAGGACAATGTGTGGAAGAGTCTGCCTTGGCATGTCAAGGACAATGTGTTGCTTTAGTCACCACCTTCTCATCCAGTGACTCACAcagtgtctgcgtcccaaattgcaccctattccctttatacactgagtataccaaacattaggaacaccttcctgatattgacTTGCACCCTCTCCCCTCAtgacagcctcaattcatcagggcattggactctacaagatgtagaaacgttccacagggatgctggcccacgttgactacaatgcttcccacagttgtgtcgagttggctggatgttctttggttggtggaccattattgatacacacgggaaactgttgagcgtgaaaaacccagcagcgttgcagttcttgacaagaaacgttgcgcctggcacctactaccataccccattccaaggcaattaaatattttgtcttgcccattcaccctctgaatgacacacatacacaatccatgtctcaattatctcaaggctcaacaatccttatttaacctgcatcctccccttcatctacactgatttgaagtggatttaacaagtgacacgaATAAggtatagctttcacctggattcacctggtcagtctgtatcatggagagagcaggtgttcttaatgttttgtacacactacagtgtagtggactacttttgaccagggcccatagggctcggGTGCAAATTGGGACGCATGCAGTGACATGCAGGGACGGTGAACTCATGACCCTAGAATGTTCTGCTTTACAGATACAACCATACCTGGAACTAGGACTGACTTAATACATGCCATGGAAAATATTAGAAGGAATAGGCTTCACTGCCTGAAAAGCCCTCGAATTGGAAACAAATGTTTTTTAACTAAAAACCCGCCAAACTTAATCATGCTCAATATAAGGCGTGACtcccaaatgacaacctattcccgtATCTAGCACACTGCGTTTGTCAGAAGTGCCGttggggtgccattttggactcacACAAGGCCTGCCATTTTGGTTTTCTCTGACAATACGTTACAATACTGCCATGTTGGTGACTATTTGAGAAGTGTCAGATTGCCATCAGATAGAGATGTCAAATGTAAAAGTGTGTATCTATGAGATGCCAATGTAATACAGCGTAGCTACACCTGGCTGTTTCAAATTCATGTTTGATCCTTTCCTTGTTGTGCAATAATATTGCCAAAGACTGATTGATTTCAAACTATTTCATCCATTCATTCAATCATGTAAATATCATACTGTCCAATAActgtggcaaaaaaaaaaaaatgtaacaatgttttttttttttttttctcctttc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU392869 False 1091 lncRNA 0.49 2 36125408 36128082
TU392870 False 839 lncRNA 0.48 2 36125408 36128082
TU392871 False 1343 lncRNA 0.49 2 36125408 36128082
TU392868 False 845 lncRNA 0.49 2 36126194 36128082
TU392872 True 1421 lncRNA 0.43 2 36126194 36128946

Neighbor

gene id symbol gene type direction distance location
LOC110522562 LOC105017690 coding upstream 2046 36039096 ~ 36123362 (+)
LOC118964470 NA coding upstream 241168 35883168 ~ 35884241 (+)
LOC110522558 LOC106571671 coding upstream 306100 35803948 ~ 35819308 (+)
LOC110522555 LOC106608214 coding upstream 364149 35732092 ~ 35761259 (+)
LOC110521090 LOC106608213 coding upstream 401815 35561988 ~ 35723593 (+)
LOC110522563 LOC106608227 coding downstream 10010 36138956 ~ 36158325 (+)
LOC110522575 NA coding downstream 909609 37038555 ~ 37040052 (+)
snw1 LOC106608236 coding downstream 1024078 37153024 ~ 37167042 (+)
LOC110517371 LOC106571681 coding downstream 1059064 37188010 ~ 37226273 (+)
LOC110522567 LOC106608238 coding downstream 1142227 37271173 ~ 37283482 (+)
G347210 NA non-coding upstream 143482 35981148 ~ 35981926 (+)
G347177 NA non-coding upstream 217468 35907689 ~ 35907940 (+)
G347173 NA non-coding upstream 224093 35901101 ~ 35901315 (+)
G347155 NA non-coding upstream 283129 35841957 ~ 35842279 (+)
G347236 NA non-coding downstream 1503 36130449 ~ 36130907 (+)
G347604 NA non-coding downstream 4551 36133497 ~ 36133739 (+)
G347619 NA non-coding downstream 30775 36159721 ~ 36160047 (+)
G347636 NA non-coding downstream 31263 36160209 ~ 36160984 (+)
G347637 NA non-coding downstream 32539 36161485 ~ 36162002 (+)
G347178 NA other upstream 216957 35908246 ~ 35908451 (+)
G347151 NA other upstream 291564 35833369 ~ 35833844 (+)
G346334 NA other upstream 1051070 35073939 ~ 35074338 (+)
LOC110522546 LOC106608201 other upstream 1303226 34807607 ~ 34831281 (+)
G348133 NA other downstream 1031148 37160094 ~ 37161123 (+)
LOC110522576 LOC106608246 other downstream 1316521 37445368 ~ 37501952 (+)
G349855 NA other downstream 2275699 38404645 ~ 38405464 (+)
G349877 NA other downstream 2303233 38432179 ~ 38434024 (+)
LOC110522591 LOC105024333 other downstream 2761437 38890314 ~ 38897681 (+)

Expression


Co-expression Network