G347639 (LOC100136379)


Basic Information

Item Value
gene id G347639
gene name LOC100136379
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 36164408 ~ 36165155 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU393336
CCTGAATCaaccaatcaattaatcaatacTGACCTTCTGGTAGCTGCTAACCCCCACTAGGGGGAGCATCGCTAGGAGGAGGCAGAAAAACCATCCAGCCAGCATCACAGCAGTGGCGTGGGGCAGACGCAACTTCCTGTCCAGCCTCATGGCGAACGTTATTGCGTACCACCTCTCTAGCGTAATCACTGTCAGCGTATAAACCGACAGCTCGCTGGCGAACACCGTGAGGAACCCCGCCAACCCGCAACCCGGCCCCGTCTGCCAGTCGATGGCGTGGTTGTAGTACTCCATCTTGGTGTGAAGGTCCACTGAGGCGATGAGGAGGAGATATATCCCCATGCAGAGGTCAGCGAAGGCCAGGTGACACATGAGGAAGCGTGAGACGGAGAGCTTGTAGTGGGAGGTGAGGAGGACCAGTAGCACCACCACATTACCTACTACAGCCAGCAGAGACacaaaccacacagacacacgcaggaAGCTGAAGCCCATGATGTCCTCACACGGGTTGAACTCGTCGGGTGCAGGGGCGCAGGTCACCTCCTCGCCCTCCTCACAGACCACGTAGTCGTAGCGATTGTCAAAGTTCTGGCTGGTGTCCTCCTGTGGGTTCTGTAAGATGAGATAAGACAAgacatattgtattgtattgtcaattgccttgctcaagtgcacaaCGGCAGGACATGGTATCAAAGAaacgttaaaaaaaatatatattttacatttcattCCTTTCCACTCC

Function

NR:

description
thyrotropin receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU393336 True 748 lncRNA 0.53 1 36164408 36165155

Neighbor

gene id symbol gene type direction distance location
LOC110522563 LOC106608227 coding upstream 6083 36138956 ~ 36158325 (+)
LOC110522562 LOC105017690 coding upstream 41046 36039096 ~ 36123362 (+)
LOC118964470 NA coding upstream 280168 35883168 ~ 35884241 (+)
LOC110522558 LOC106571671 coding upstream 345100 35803948 ~ 35819308 (+)
LOC110522555 LOC106608214 coding upstream 403149 35732092 ~ 35761259 (+)
LOC110522575 NA coding downstream 873400 37038555 ~ 37040052 (+)
snw1 LOC106608236 coding downstream 987869 37153024 ~ 37167042 (+)
LOC110517371 LOC106571681 coding downstream 1022855 37188010 ~ 37226273 (+)
LOC110522567 LOC106608238 coding downstream 1106018 37271173 ~ 37283482 (+)
LOC110522568 LOC106571107 coding downstream 1119106 37284261 ~ 37402023 (+)
G347638 LOC100136379 non-coding upstream 126 36162590 ~ 36164282 (+)
G347637 NA non-coding upstream 2406 36161485 ~ 36162002 (+)
G347636 NA non-coding upstream 3424 36160209 ~ 36160984 (+)
G347619 NA non-coding upstream 4361 36159721 ~ 36160047 (+)
G347604 NA non-coding upstream 30669 36133497 ~ 36133739 (+)
G347640 NA non-coding downstream 4226 36169381 ~ 36170026 (+)
G347641 LOC100136379 non-coding downstream 5985 36171140 ~ 36171388 (+)
G347645 NA non-coding downstream 10549 36175704 ~ 36175917 (+)
G347652 NA non-coding downstream 21048 36186203 ~ 36186526 (+)
G347656 NA non-coding downstream 26136 36191291 ~ 36191530 (+)
G347178 NA other upstream 255957 35908246 ~ 35908451 (+)
G347151 NA other upstream 330564 35833369 ~ 35833844 (+)
G346334 NA other upstream 1090070 35073939 ~ 35074338 (+)
LOC110522546 LOC106608201 other upstream 1342226 34807607 ~ 34831281 (+)
G348133 NA other downstream 994939 37160094 ~ 37161123 (+)
LOC110522576 LOC106608246 other downstream 1280312 37445368 ~ 37501952 (+)
G349855 NA other downstream 2239490 38404645 ~ 38405464 (+)
G349877 NA other downstream 2267024 38432179 ~ 38434024 (+)
LOC110522591 LOC105024333 other downstream 2725228 38890314 ~ 38897681 (+)

Expression


Co-expression Network