G347912


Basic Information

Item Value
gene id G347912
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 36698235 ~ 36699165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU393634
ctcggattagacaaagagcttctggatatcaggacagcaatccctcacctcggattagacaaagagcttctggatatcaggacagtgatcactacctcggattagtcaaagatcttctggatatcaggacagagatccctcacctcggattagacaaagagcttctggatatcaggacagcgatccctcacctcggattagacaaagagcttctggatatcaggacagcgatccctcacctcggattagacaaagagcttctggatatcaggacagcgatccctcacctcggattagacaaagagcttctggacatcaggacagcaatcactcccctcggattagacaaagagcttctggatatcaggactgCGAtccctcacctcggattagacaaataaTTTTTTCCTCAACAAGCAAGACGCACAGGACATTCTCGAAACAAACGACAGGGCCAACTTCCCCCGTTATTAGCAAGATGAAGAAATGCAGGTACAGGGGACACAGAACAGGATGCTTTTTACTtttataacctcactactgtat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU393634 True 546 lncRNA 0.47 4 36698235 36699165

Neighbor

gene id symbol gene type direction distance location
LOC110522563 LOC106608227 coding upstream 539910 36138956 ~ 36158325 (+)
LOC110522562 LOC105017690 coding upstream 574873 36039096 ~ 36123362 (+)
LOC118964470 NA coding upstream 813995 35883168 ~ 35884241 (+)
LOC110522558 LOC106571671 coding upstream 878927 35803948 ~ 35819308 (+)
LOC110522555 LOC106608214 coding upstream 936976 35732092 ~ 35761259 (+)
LOC110522575 NA coding downstream 339390 37038555 ~ 37040052 (+)
snw1 LOC106608236 coding downstream 453859 37153024 ~ 37167042 (+)
LOC110517371 LOC106571681 coding downstream 488845 37188010 ~ 37226273 (+)
LOC110522567 LOC106608238 coding downstream 572008 37271173 ~ 37283482 (+)
LOC110522568 LOC106571107 coding downstream 585096 37284261 ~ 37402023 (+)
G347888 NA non-coding upstream 20528 36658048 ~ 36677707 (+)
G347887 NA non-coding upstream 20862 36658783 ~ 36677373 (+)
G347889 NA non-coding upstream 28710 36668179 ~ 36669525 (+)
G347879 NA non-coding upstream 59216 36638679 ~ 36639019 (+)
G347851 NA non-coding upstream 114975 36581867 ~ 36583260 (+)
G347929 NA non-coding downstream 27154 36726319 ~ 36782249 (+)
G347939 NA non-coding downstream 54756 36753921 ~ 36754617 (+)
G347960 NA non-coding downstream 120503 36819668 ~ 36835273 (+)
G347974 NA non-coding downstream 149245 36848410 ~ 36849189 (+)
G348084 NA non-coding downstream 374098 37073263 ~ 37077812 (+)
G347178 NA other upstream 789784 35908246 ~ 35908451 (+)
G347151 NA other upstream 864391 35833369 ~ 35833844 (+)
G346334 NA other upstream 1623897 35073939 ~ 35074338 (+)
LOC110522546 LOC106608201 other upstream 1876053 34807607 ~ 34831281 (+)
G348133 NA other downstream 460929 37160094 ~ 37161123 (+)
LOC110522576 LOC106608246 other downstream 746302 37445368 ~ 37501952 (+)
G349855 NA other downstream 1705480 38404645 ~ 38405464 (+)
G349877 NA other downstream 1733014 38432179 ~ 38434024 (+)
LOC110522591 LOC105024333 other downstream 2191218 38890314 ~ 38897681 (+)

Expression


Co-expression Network