G347939


Basic Information

Item Value
gene id G347939
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 36753921 ~ 36754617 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU393662
GCAACCGTAGACTACCTCATAGCAACCCTAGACCATCCCATAGCAAACCTAGACCATCCCATACACTCTAAACAGGTGACATGTGGATTATTTGGGGAGATTACCTATCAAATGTCACTCAGGTGGATTCTGGTAATTTAGGCTAATATTGTGGGATGTCTGCATCTAGCTTAGCACATTACACAAAGTACAACTATGATGCTACCCACGACAGCTCATTACACATagtacagctctctctctctctctcccccccttctctctctctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU393662 True 269 lncRNA 0.45 3 36753921 36754617

Neighbor

gene id symbol gene type direction distance location
LOC110522563 LOC106608227 coding upstream 595596 36138956 ~ 36158325 (+)
LOC110522562 LOC105017690 coding upstream 630559 36039096 ~ 36123362 (+)
LOC118964470 NA coding upstream 869681 35883168 ~ 35884241 (+)
LOC110522558 LOC106571671 coding upstream 934613 35803948 ~ 35819308 (+)
LOC110522555 LOC106608214 coding upstream 992662 35732092 ~ 35761259 (+)
LOC110522575 NA coding downstream 283938 37038555 ~ 37040052 (+)
snw1 LOC106608236 coding downstream 398407 37153024 ~ 37167042 (+)
LOC110517371 LOC106571681 coding downstream 433393 37188010 ~ 37226273 (+)
LOC110522567 LOC106608238 coding downstream 516556 37271173 ~ 37283482 (+)
LOC110522568 LOC106571107 coding downstream 529644 37284261 ~ 37402023 (+)
G347912 NA non-coding upstream 54756 36698235 ~ 36699165 (+)
G347888 NA non-coding upstream 76214 36658048 ~ 36677707 (+)
G347887 NA non-coding upstream 76548 36658783 ~ 36677373 (+)
G347889 NA non-coding upstream 84396 36668179 ~ 36669525 (+)
G347879 NA non-coding upstream 114902 36638679 ~ 36639019 (+)
G347960 NA non-coding downstream 65051 36819668 ~ 36835273 (+)
G347974 NA non-coding downstream 93793 36848410 ~ 36849189 (+)
G348084 NA non-coding downstream 318646 37073263 ~ 37077812 (+)
G348131 NA non-coding downstream 402460 37157077 ~ 37157482 (+)
G348141 NA non-coding downstream 421740 37176357 ~ 37176560 (+)
G347178 NA other upstream 845470 35908246 ~ 35908451 (+)
G347151 NA other upstream 920077 35833369 ~ 35833844 (+)
G346334 NA other upstream 1679583 35073939 ~ 35074338 (+)
LOC110522546 LOC106608201 other upstream 1931739 34807607 ~ 34831281 (+)
G348133 NA other downstream 405477 37160094 ~ 37161123 (+)
LOC110522576 LOC106608246 other downstream 690850 37445368 ~ 37501952 (+)
G349855 NA other downstream 1650028 38404645 ~ 38405464 (+)
G349877 NA other downstream 1677562 38432179 ~ 38434024 (+)
LOC110522591 LOC105024333 other downstream 2135766 38890314 ~ 38897681 (+)

Expression


Co-expression Network