G349858


Basic Information

Item Value
gene id G349858
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 38408390 ~ 38408944 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU395889
TTTAATCCACCATGTGGAAACTATTCATCAATTTCTTATTGATGGTGATTATGGCTgcagtgagagagtgagacagagagacagaacaatggGATAACATCTATCACATGCAGCCATTAGTTCAGCCCTGCAGAAACCATACACTCTGCCAACAGTTGTTTCTCTACTTGACTTCAAAAGTGTGTTTCCAATAAGATGTTGATATTATTTTTGATAGCCATAGCAAAGTTATGGACATTGTGTGAGTTAGGACATTGGACATCACCCCCATGGGACATCACCCCCATGGGTGAGTTAgatggtatatttaagcaataaggcatgagggggtgtggtatatggccaatataccacggctagataaagcccttagccatggtatattggccatataccacaaacccccgaggtgccttattgctattataaactggttaccaacataattagagcagtaaaaataaatgttttgtcatacctgtggtatgcagtctgatataccacggctgtcagccaatcagcattcaggagaGTCTATAACCTGTTATATGTGGT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU395889 True 555 lncRNA 0.41 1 38408390 38408944

Neighbor

gene id symbol gene type direction distance location
LOC110522580 LOC106608254 coding upstream 116852 38288197 ~ 38291538 (+)
LOC110521100 LOC106608253 coding upstream 173712 37969722 ~ 38234678 (+)
LOC110522584 LOC106608258 coding upstream 509182 37897636 ~ 37899208 (+)
LOC110521098 LOC106608260 coding upstream 510866 37879402 ~ 37897524 (+)
actc1a LOC105024319 coding upstream 529872 37870752 ~ 37878518 (+)
thbs1b LOC106608163 coding downstream 217272 38626216 ~ 38651062 (+)
LOC110522590 NA coding downstream 408956 38817900 ~ 38820524 (+)
LOC118964474 LOC106608159 coding downstream 416839 38825783 ~ 38885772 (+)
LOC110522591 LOC105024333 coding downstream 481370 38890314 ~ 38897681 (+)
LOC118964476 NA coding downstream 490460 38898435 ~ 38900534 (+)
G349857 NA non-coding upstream 1083 38407107 ~ 38407307 (+)
G349856 NA non-coding upstream 2055 38406120 ~ 38406335 (+)
G349533 NA non-coding upstream 43996 38363369 ~ 38364394 (+)
G349531 NA non-coding upstream 45363 38354868 ~ 38363027 (+)
G349530 NA non-coding upstream 46794 38354317 ~ 38361596 (+)
G349861 NA non-coding downstream 4422 38413366 ~ 38413583 (+)
G349866 NA non-coding downstream 8209 38417153 ~ 38417407 (+)
G349881 NA non-coding downstream 28028 38436972 ~ 38438213 (+)
G349915 NA non-coding downstream 74078 38483022 ~ 38483314 (+)
G349918 NA non-coding downstream 77283 38486227 ~ 38486503 (+)
G349855 NA other upstream 2926 38404645 ~ 38405464 (+)
LOC110522576 LOC106608246 other upstream 911384 37445368 ~ 37501952 (+)
G348133 NA other upstream 1247267 37160094 ~ 37161123 (+)
LOC110522562 LOC105017690 other upstream 2335434 36039096 ~ 36123362 (+)
G347178 NA other upstream 2499939 35908246 ~ 35908451 (+)
G349877 NA other downstream 23235 38432179 ~ 38434024 (+)
G350211 NA other downstream 494786 38903730 ~ 38904774 (+)
G350665 NA other downstream 979197 39388141 ~ 39389474 (+)
G351441 NA other downstream 1725743 40134687 ~ 40136773 (+)

Expression


Co-expression Network