G350213


Basic Information

Item Value
gene id G350213
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 38760418 ~ 38763806 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU396292
cctCTGGATACAATGGGTGGTTTTCATTGATGACGTAGATTACTTGGTGCTGTAACGAAAACATTACAGCCAAAACATGACTATCATTTTCTTATTTTGACATACTTGACAGCATATACACCGAGTGGAgaaaacattaacaacacctgctcttttcatgacgtAAACCACAATTCCATCCACAGATGTTATGTGAGGAACGTCATACAGTATACAACAAAATTAATGACagaatatatacactgagtgtagaaaacattagcaacacctgctcagctgtccccagtccacctggccgtgctgctgctccaatttcaactgttctgccttgttattattggaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccacgccacatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtacgaagggctatataaataaatttgatttgattttcatgACGTAAACCACAATTCCATCCACAGATGTTATGTGAGGAACGTCATACAGTATATAACAAAACTAATGACAGAATATATAaactgagtgtagaaaacattagcaacacctgctcttttcatgacgtAAACCCCAATTCCATCCACAGATGTTATGTGAGGTACGTCATACAGTATATAACAAAACTAATGACAGCcgtaatggaaacaggaagtttgcGGACCGTTTTCATGAACGCCAATAGATAATTTATTCCGTACAAAATGGTGAGATCTTTTTTGTGTTagtaaaattaattatgtgatAAATGGTGGTAAAAAATATTGATGTAAATTAATACGATgaatataatatattagagaTATTTGCCTgatacatgaaaacttaagcgaaaAAGTGCATTTTTGTATGAGAAAAAAAAAGTCAATTTGGTGGAAACACATCACTGGTGGAAAATGTGCATGTTTTATTTATGAGTATTCACATGTTTTATTTATGAGTATTCACATGTCTTCTTTATGAGTTTTCACATGTCTTCTTTATGAGTATTCACATGTTTTATTTATGAGTATTCACATGTCTTCTTTATGAGTATTCACATGTTTTATTTATGAGTATTCACATGTCTTCTTTATGAGTATTCACATGTTTTATTTATGAGTATTCACATGTCTTCTTTATGAGTATTCACATGTTTTATTTATGAGTATTCACATGTCTTCTTTATGAGTATTCACATGTTTTATTTATGAGTATTCACATGTCTTCTTTATGAGTATTCACATGTCTTCTTTATGAGTATTCACATGTTTTATTTATGAGTATTCACATGTCTTCTTTATGAGTATTCACATGTTTTATTTATGAGTATTCACATGTCTTCTTTATGAGTATTCACATGTTTTATTTATGAGTATTCACATGTTTTCTTTATGAGTTTTCACATGTCTTCTTTATGAGTATTCACATGTCTTCTTTATGAGTTTTCACATGTCTTCTTTATGAGTATTCACATGTTTTATTTATGAGTATTCACATGTCTTCTTTATGAGTATTCACATGTCTTCTTTATGAGTATTCACATGTCTTCTTTATGAGTATTCACATGAAAatatgtcaccaattggatggaaacctagctagtgactgaccaggtgaatccaggtgaaagctgtgatcccttatggatgtcacctgttaaatccacttcagtcagtgcagatgaaaggggaggagacagggttaaagaaggattgttaagccttgagacaattgagacatggattgtgtatgtgtgccattcagagggtgaatgggcaagacaaaatgtttaagtgcctttgtactgggtatggtagtaggtgccagggcgcaccggtttgaatgtgtcaagaacaGCAACGCTGCTGAGTATTTCAGGCTCAACGgtgtcctgtgtgtatcaagaatggttcaccacccaaagaacatccagcaaaattgatacaactgtgggaagcattggagtcaacatggggccagcatccctgtggaacgctttccacaccttgtagagtcccatgtcccgatgaattgaggctgttctgaggtcgaaaagggatgcaactcaatattaggaagttgttcctaatgttttgtacactcagtgtaaaccTGTCCGTGACCATCATCaggaaaaaaaataacaattgaaACGAAAAAAAAACGACAAACTACATCAGTTAGACACGATCTTTGTAAACCTTGTGGTTTGAACGTTTGAATAAAATATCTTTATATAAGGGTTATAAATGAAATCTGACATTATCTACTAAGCAAAAGACTTTCATTAGGCCTATATTAATTTCAAATTTATCAGAGGTTCATTATTAattataaaccgggtggttcgagccctaaaTGCTGATAGGCTCAAAGTCGTGGTATATcactgtataccacaggtatgacaaaacatttatttttactgctctaattacattggtaaccagtttataatagcaataaggcacctcgggggtttgtggtatatggccaatataacacggctaagggctgtatccaggcacgcCGCATTGCATCGTGAataagaacagcctttagccgtggtatattggccgcaTATCGCAAaacctcgtgccttattgctcaATTATACCATTCAGTGTGTCGTAAATGGAGCAGTCTGGGCATTGATCTGCAGCGTCTCTGTAGAGTCAATAGGATTGATCCATTGAGGTTTTTTTGTAGGAGAACTAATCACACAGAACCCTTTCTCCCTCAATTAGTCACATCAGACTCTCTTCAGGGGTTGTGtcctaaatggtaccctattccctttatagtgcactacttttaaccagggccctatggcaccctattccctttatagtgcactacttttaaccagggcccatagtgctctggtaaaaagtagtgcacaatataggacATAAGCTGACATTTTGGACTGACCATCTACAACCGAAGGCCCTTTTTAGATGAGTGTTTCTCAATCTGTTTTTAACAGGGTCTGTATTCCAGTCTGTTTTTGCTAAAAATGCCAACAAGTCCTTGTCACTCATTGTTTTGAGAGATGGTGTTGatatctgagaccaggctaggaCTGGCAAACTATGTTTTAATCCTCCTGGGGTGCTGCTTCCATCAAAACTAGCACTCGAACATCTCAGGGTACCTGGGGTGCTGCTTCCATCAAAACTAGCACTCGAACATCTCAGGGTACCTGGGGTGCTGCTTCCATCAAAAC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU396292 True 3389 lncRNA 0.38 1 38760418 38763806

Neighbor

gene id symbol gene type direction distance location
thbs1b LOC106608163 coding upstream 109356 38626216 ~ 38651062 (+)
LOC110522580 LOC106608254 coding upstream 468880 38288197 ~ 38291538 (+)
LOC110521100 LOC106608253 coding upstream 525740 37969722 ~ 38234678 (+)
LOC110522584 LOC106608258 coding upstream 861210 37897636 ~ 37899208 (+)
LOC110521098 LOC106608260 coding upstream 862894 37879402 ~ 37897524 (+)
LOC110522590 NA coding downstream 54094 38817900 ~ 38820524 (+)
LOC118964474 LOC106608159 coding downstream 61977 38825783 ~ 38885772 (+)
LOC110522591 LOC105024333 coding downstream 126508 38890314 ~ 38897681 (+)
LOC118964476 NA coding downstream 135598 38898435 ~ 38900534 (+)
LOC110522592 LOC106608157 coding downstream 157532 38921338 ~ 38942012 (+)
G350193 NA non-coding upstream 19520 38740687 ~ 38740898 (+)
G350186 NA non-coding upstream 27248 38732947 ~ 38733170 (+)
G349999 NA non-coding upstream 87772 38672444 ~ 38672646 (+)
G349989 NA non-coding upstream 114959 38643985 ~ 38645459 (+)
G349960 NA non-coding upstream 188918 38571269 ~ 38571500 (+)
G350219 NA non-coding downstream 121 38763927 ~ 38764322 (+)
G350221 NA non-coding downstream 3358 38767164 ~ 38767380 (+)
G350225 NA non-coding downstream 18068 38781874 ~ 38782902 (+)
G350232 NA non-coding downstream 41914 38805720 ~ 38806230 (+)
G350206 NA non-coding downstream 45124 38808930 ~ 38809369 (+)
G349877 NA other upstream 326394 38432179 ~ 38434024 (+)
G349855 NA other upstream 354954 38404645 ~ 38405464 (+)
LOC110522576 LOC106608246 other upstream 1263412 37445368 ~ 37501952 (+)
G348133 NA other upstream 1599295 37160094 ~ 37161123 (+)
LOC110522562 LOC105017690 other upstream 2687462 36039096 ~ 36123362 (+)
G350211 NA other downstream 139924 38903730 ~ 38904774 (+)
G350665 NA other downstream 624335 39388141 ~ 39389474 (+)
G351441 NA other downstream 1370881 40134687 ~ 40136773 (+)
G352136 LOC106608303 other downstream 2226353 40990159 ~ 40990505 (+)

Expression


Co-expression Network