G351819


Basic Information

Item Value
gene id G351819
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 40632285 ~ 40634563 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU398201
CATCTGTTCTAGTGCTGCAGTACAGAACAACAGTATTTATGTGGACTGAAGACTTTCCTTGTGAAAATGGTCTCACTATGGGGTTTTAGCCAGCCAGCTCTTAGGAAGAAGAATTTAAAACAGAGAATTTTGCctattgaaaaaatatatatatttttgttgcaCCCAATATTGCTCATTCTGTGATCGAACCAGATATAGAGACCAAACCTGACATAGTGGACAATGGCAATATATAATGGCATTTTCAACCAAATGTGATAGACCAGAGGATTTCAATTGATCCACAGCAGTGACATATTATTTTCAGGCCTATGTTATTACTCCTGACTCAAGTACTCAAGGGCTTaatgattagttgaatcaagtGTGATAGTGTTATCCTAGCTGGAATACAAATGAGTTGGCTGTGGAGCCTCTGTACTAGAACTGCCAAATGCTTTGATCGCCCCGTAGCATTCACTTCTTTCatcgtgaagtgctttgagaggctagttaaggatcatatcacctccatcttacctgataccctagacccacttcaatttgcttacccgCCCCAATAGATCTATCGATGACGCCATCGCACTGAACACTGCTCTATCCCAACGGGACAAGAAAAATACTAC
>TU398202
CAATATTGCTCATTCTGTGATCGAACCAGATATAGAGACCAAACCTGACATAGTGGACAATGGCAATATATAATGGCATTTTCAACCAAATGTGATAGACCAGAGGATTTCAATTGATCCACAGCAGTGACATATTATTTTCAGGCCTATGTTATTACTCCTGACTCAAGTACTCAAGGGCTTaatgattagttgaatcaagtGTGATAGTGTTATCCTAGCTGGAATACAAATGAGTTGGCTGTGGAGCCTCTGTACTAGAACTGCCAAATGCTTTGATCGCCCCGTAGCATTCACTTCTTTCatcgtgaagtgctttgagaggctagttaaggatcatatcacctccatcttacctgataccctagacccacttcaatttgcttacccgCCCCAATAGATCTATCGATGACGCCATCGCACTGAACACTGCTCTATCCCAACGGGACAAGAAAAATACTACAATTCTTACtacatgtaagaatgctgttcatcgactacagctcgcctttcaacaccatggtgccctCCAAGCGCATCACTGatctcggggccctgggtctgaacctcgccctgtgcaactgggtcctggacttgctGACGGGCCGACCTCAGGTGTTGAAGGTAGACAACAACACCTCCAaaaacgctgatcctcaacatgggggcccaaACTAGCACAGCTGTAGGAGGTAGAACGgctgagggtgctgcagtacCCCCTGAAAATCtgaaggaaaaaatatatattatttcacAAAATtagtgcagtttttttttttttcagcatCTCCACTTTGGCAAAAAAGGTAGTTGTATAATTAAGAACAGAATCTTGTAGGATTCAATAGTTGGAATTATAAGAGTTGTTGCCCCTGCCCCTtctttgtgatgtcattctaatagaatccagaaagaacaaaaccctggtcctttctctgtgatgtcaatctaatggaatccagaaagaacaaaaccctggccctttctctgtgatgtcattctaatggaatccagaaagaacaaaaccctggccctttctctgtgatgtcattctaatagaATCCATAAATAACAAAACCctggccctttctctgtgatgtcattctaatggaatccagaaagaacaaaaccctgtctctttctctgtgatgtcattctaatagaatccagaaagaacaaaaccctggccctttctctgtgatgtcattctaatggaatccagaaagaacaaaaccctgtccctttctctgtgatgtaattctaatggaatccagaaagaacacaaccctggccctttctctgtggtgtcattctaatggaatccagaaagaacaaaaccctgtcctcaaACAGTTCCATGAAAAGGTGCAAAGTTACAGGCAAAGACATCcacatcaaattaaatatttttcttgatcaaataacCTGTAAAACAACCAGTTTTTGTGCATCATTAATTGaccatccttacaaaccacttcatgtaaatgtactgtactgtacataggctggtcatttagggttgtacctgtagactttcTATGTGGCTCAGTTGATAAGAGTATGGCATTTGCAATggtagggttgtgggttcaagaTGAAGTATAAACATGTAGACACTACTGTAAGATGCTCCGGATAGGAGTGTCTACTAAAATGGAAAAGTATGAATAAACCATTTCAGTTTTCACGTAGAAATAAGTTGAATTTGCAaagtgtcattggaacacaggagtgatggttgctgataatgggcctctgtacgcctatgtagatattccattaaaaatcagccgtttccagctacaatagtcatttacaacattaacaatgtctacactgtatttctgatcaatttgatgttattttaatggacaaaaaaaatgtgcttttctttcaaaaacaaggaccatttctaagtgaccccaaacttttaaacggtagtgtatatttttctGTATAAAACAAAAAACGCATAAAACAATGTACATTTTCTCACCAGAGATGTATTTCattcaaattgacttgttgtggataaaaagCTGtgcaaataaaacaaatacagtttACTGTTAAAATTACCGtgtaccgaataaaaaatacaagttaa
>TU398204
CAATATTGCTCATTCTGTGATCGAACCAGATATAGAGACCAAACCTGACATAGTGGACAATGGCAATATATAATGGCATTTTCAACCAAATGTGATAGACCAGAGGATTTCAATTGATCCACAGCAGTGACATATTATTTTCAGGCCTATGTTATTACTCCTGACTCAAGTACTCAAGGGCTTaatgattagttgaatcaagtGTGATAGTGTTATCCTAGCTGGAATACAAATGAGTTGGCTGTGGAGCCTCTGTACTAGAACTGCCAAATGCTTTGATCGCCCCGTAGCATTCACTTCTTTCatcgtgaagtgctttgagaggctagttaaggatcatatcacctccatcttacctgataccctagacccacttcaatttgcttacccgCCCCAATAGATCTATCGATGACGCCATCGCACTGAACACTGCTCTATCCCAACGGGACAAGAAAAATACTAC
>TU398203
AGTTGATAAGAGTATGGCATTTGCAATggtagggttgtgggttcaagaTGAAGTATAAACATGTAGACACTACTGTAAGATGCTCCGGATAGGAGTGTCTACTAAAATGGAAAAGTATGAATAAACCATTTCAGTTTTCACGTAGAAATAAGTTGAATTTGCAaagtgtcattggaacacaggagtgatggttgctgataatgggcctctgtacgcctatgtagatattccattaaaaatcagccgtttccagctacaatagtcatttacaacattaacaatgtctacactgtatttctgatcaatttgatgttattttaatggacaaaaaaaatgtgcttttctttcaaaaacaaggaccatttctaagtgaccccaaacttttaaacggtagtgtatatttttctGTATAAAACAAAAAACGCATAAAACAATGTACATTTTCTCACCAGAGATGTATTTCattcaaattgacttgttgtggataaaaagCTGtgcaaataaaacaaatacagtttACTGTTAAAATTACCGtgtaccgaataaaaaatacaagttaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU398201 False 629 lncRNA 0.40 1 40632285 40632913
TU398202 False 2113 lncRNA 0.39 1 40632451 40634563
TU398204 False 463 lncRNA 0.42 1 40632451 40632913
TU398203 True 560 lncRNA 0.33 1 40634004 40634563

Neighbor

gene id symbol gene type direction distance location
paqr8 paqr8 coding upstream 1464 40626393 ~ 40630821 (+)
stmn4 LOC106608277 coding upstream 34896 40579686 ~ 40597389 (+)
LOC110522596 LOC106591683 coding upstream 194477 40391650 ~ 40437808 (+)
LOC118936457 NA coding upstream 245982 40379534 ~ 40386303 (+)
LOC118964479 NA coding upstream 319604 40311638 ~ 40312681 (+)
LOC110521109 LOC106608311 coding downstream 16091 40650654 ~ 40674839 (+)
LOC110522626 LOC106608310 coding downstream 74099 40708662 ~ 40714024 (+)
si:ch211-63o20.7 stk35 coding downstream 86963 40721526 ~ 40732661 (+)
LOC110521111 LOC106571044 coding downstream 143795 40778358 ~ 40868194 (+)
hmbox1b LOC106608307 coding downstream 233777 40868340 ~ 40887505 (+)
G351806 NA non-coding upstream 22564 40609242 ~ 40609721 (+)
G351804 NA non-coding upstream 24839 40607160 ~ 40607446 (+)
G351790 NA non-coding upstream 31122 40598575 ~ 40601163 (+)
G351789 NA non-coding upstream 34284 40597612 ~ 40598001 (+)
G351786 NA non-coding upstream 118176 40513718 ~ 40514109 (+)
G351820 NA non-coding downstream 1173 40635736 ~ 40636000 (+)
G351831 NA non-coding downstream 26759 40661322 ~ 40664629 (+)
G351833 NA non-coding downstream 30529 40665092 ~ 40665512 (+)
G351836 NA non-coding downstream 33356 40667919 ~ 40668205 (+)
G351441 NA other upstream 495512 40134687 ~ 40136773 (+)
G350665 NA other upstream 1242811 39388141 ~ 39389474 (+)
G350211 NA other upstream 1727511 38903730 ~ 38904774 (+)
LOC110522591 LOC105024333 other upstream 1734629 38890314 ~ 38897681 (+)
G349877 NA other upstream 2198261 38432179 ~ 38434024 (+)
G352136 LOC106608303 other downstream 355596 40990159 ~ 40990505 (+)
G352340 NA other downstream 575684 41210247 ~ 41210998 (+)
G352341 NA other downstream 576550 41211113 ~ 41214206 (+)
G352477 NA other downstream 731638 41366201 ~ 41366607 (+)
G353125 NA other downstream 1490113 42124676 ~ 42125759 (+)

Expression


Co-expression Network