G351826


Basic Information

Item Value
gene id G351826
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 40677593 ~ 40678170 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU398211
agagcatttctcctccccttccactgagagcatttctcctcaccttccactgagagcatttctcctccccttccactgagagcatttctcctccccttccactgagagcatttctcctcaCCTTCCACTGTATGTTTTTTCTCTTCTTTTTTAACATTTCATTCTTCCCTGTGGTCTCTACGGAGGTAGTGGAAACCTGTTACTTCTACATGGTGTGCTATCTATGAGTTCTTcctttggactattttgtgtttgtgtctctttTTAAATGATTGTCTTTCTGTCCCGCCTGAGAGGTAGACAGAGGTTTATGTTATGTTTTGCCACATTTTATGGCAATGTATTTTTACGAGGATAATGATAAATAAGCTACATTTGGTTTGACTCGTTGTGGTTTTTAATCGAGTCAGTTCCTTCCATAACAGTATTTTACTCTTCCCCATCTTGGTAAGCATTGTTATGGTTCTGTCTGTATAAGCTTCTGGACAGTATTGGGGTCATTTTGAATTGGGCAG
>TU398212
atttctcctccccttccactgagagcatttctcctcaCCTTCCACTGTATGTTTTTTCTCTTCTTTTTTAACATTTCATTCTTCCCTGTGGTCTCTACGGAGGTAGTGGAAACCTGTTACTTCTACATGGTGTGCTATCTATGAGTTCTTcctttggactattttgtgtttgtgtctctttTTAAATGATTGTCTTTCTGTCCCGCCTGAGAGGTAGACAGAGGTTTATGTTATGTTTTGCCACATTTTATGGCAATGTATTTTTACGAGGATAATGATAAATAAGCTACATTTGGTTTGACTCGTTGTGGTTTTTAATCGAGTCAGTTCCTTCCATAACAGTATTTTACTCTTCCCCATCTTGGTAAGCATTGTTATGGTTCTGTCTGTATAAGCTTCTGGACAGTATTGGGGTCATTTTGAATTGGGCAGTCAATTCAGCAATTTAAACTGAAATGGTGTTTGTTCTCAATGATTTCTCAATAAATGGAAGAG
>TU398213
atttctcctccccttccactgagagcatttctcctcaCCTTCCACTGTATGTTTTTTCTCTTCTTTTTTAACATTTCATTCTTCCCTGTGGTCTCTACGGAGGTAGTGGAAACCTGTTACTTCTACATGGTGTGCTATCTATGAGTTCTTcctttggactattttgtgtttgtgtctctttTTAAATGATTGTCTTTCTGTCCCGCCTGAGAGGTAGACAGAGGTTTATGTTATGTTTTGCCACATTTTATGGCAATGTATTTTTACGAGGATAATGATAAATAAGCTACATTTGGTTTGACTCGTTGTGGTTTTTAATCGAGTCAGTTCCTTCCATAACAGTATTTTACTCTTCCCCATCTTGGTAAGCATTGTTATGGTTCTGTCTGTATAAGCTTCTGGACAGTATTGGGGTCATTTTGAATTGGGCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU398211 False 515 lncRNA 0.41 1 40677593 40678107
TU398212 False 495 lncRNA 0.38 1 40677676 40678170
TU398213 True 432 lncRNA 0.39 1 40677676 40678107

Neighbor

gene id symbol gene type direction distance location
LOC110521109 LOC106608311 coding upstream 3016 40650654 ~ 40674839 (+)
paqr8 paqr8 coding upstream 46772 40626393 ~ 40630821 (+)
stmn4 LOC106608277 coding upstream 80204 40579686 ~ 40597389 (+)
LOC110522596 LOC106591683 coding upstream 239785 40391650 ~ 40437808 (+)
LOC118936457 NA coding upstream 291290 40379534 ~ 40386303 (+)
LOC110522626 LOC106608310 coding downstream 30492 40708662 ~ 40714024 (+)
si:ch211-63o20.7 stk35 coding downstream 43356 40721526 ~ 40732661 (+)
LOC110521111 LOC106571044 coding downstream 100188 40778358 ~ 40868194 (+)
hmbox1b LOC106608307 coding downstream 190170 40868340 ~ 40887505 (+)
abcd4 abcd4 coding downstream 240070 40918240 ~ 40945004 (+)
G351836 NA non-coding upstream 9388 40667919 ~ 40668205 (+)
G351833 NA non-coding upstream 12081 40665092 ~ 40665512 (+)
G351831 NA non-coding upstream 12964 40661322 ~ 40664629 (+)
G351820 NA non-coding upstream 41593 40635736 ~ 40636000 (+)
G351840 NA non-coding downstream 9176 40687346 ~ 40687985 (+)
G351843 NA non-coding downstream 12166 40690336 ~ 40691039 (+)
G351847 NA non-coding downstream 20906 40699076 ~ 40699298 (+)
G351816 NA non-coding downstream 37486 40715656 ~ 40716059 (+)
G351441 NA other upstream 540820 40134687 ~ 40136773 (+)
G350665 NA other upstream 1288119 39388141 ~ 39389474 (+)
G350211 NA other upstream 1772819 38903730 ~ 38904774 (+)
LOC110522591 LOC105024333 other upstream 1779937 38890314 ~ 38897681 (+)
G349877 NA other upstream 2243569 38432179 ~ 38434024 (+)
G352136 LOC106608303 other downstream 311989 40990159 ~ 40990505 (+)
G352340 NA other downstream 532077 41210247 ~ 41210998 (+)
G352341 NA other downstream 532943 41211113 ~ 41214206 (+)
G352477 NA other downstream 688031 41366201 ~ 41366607 (+)
G353125 NA other downstream 1446506 42124676 ~ 42125759 (+)

Expression


Co-expression Network