G352002


Basic Information

Item Value
gene id G352002
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 40877657 ~ 40878233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU398548
ggtcctccgagagagagaaagaaagagagaaggagagaattggagaacgcacacttagattcacacaggacaccgaataggacaggagaagtactccagatataacaaactgaccctagccccccgacacacaaactactgcagcataaatactggaggctgagacaggaggggtcaggagacactgtggccccatccgaggacacccccggacagggccaaacaggaaggatataaccccacccactttgccaaagcacagcccccacaacactagagggatatcttcaaccaccaacttaccatcctgagacaaggctgagtatagc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU398548 True 329 lncRNA 0.52 2 40877657 40878233

Neighbor

gene id symbol gene type direction distance location
LOC110521111 LOC106571044 coding upstream 9463 40778358 ~ 40868194 (+)
si:ch211-63o20.7 stk35 coding upstream 145306 40721526 ~ 40732661 (+)
LOC110522626 LOC106608310 coding upstream 163633 40708662 ~ 40714024 (+)
LOC110521109 LOC106608311 coding upstream 203080 40650654 ~ 40674839 (+)
paqr8 paqr8 coding upstream 246836 40626393 ~ 40630821 (+)
abcd4 abcd4 coding downstream 40007 40918240 ~ 40945004 (+)
LOC118964481 NA coding downstream 62398 40940631 ~ 40940967 (+)
LOC118964399 LOC106608301 coding downstream 160004 41038237 ~ 41041039 (+)
LOC110521114 LOC106608298 coding downstream 193249 41071482 ~ 41085688 (+)
LOC110522636 LOC106608297 coding downstream 548647 41426880 ~ 41445268 (+)
G351963 NA non-coding upstream 99444 40777364 ~ 40778213 (+)
G351960 elp3 non-coding upstream 113617 40758495 ~ 40764040 (+)
G351940 NA non-coding upstream 141115 40736237 ~ 40736542 (+)
G352007 NA non-coding downstream 17895 40896128 ~ 40897440 (+)
G351974 NA non-coding downstream 57894 40936127 ~ 40941155 (+)
G352117 NA non-coding downstream 78660 40956893 ~ 40957205 (+)
G352130 NA non-coding downstream 97486 40975719 ~ 40976528 (+)
G352135 NA non-coding downstream 110194 40988427 ~ 40988642 (+)
G351441 NA other upstream 740884 40134687 ~ 40136773 (+)
G350665 NA other upstream 1488183 39388141 ~ 39389474 (+)
G350211 NA other upstream 1972883 38903730 ~ 38904774 (+)
LOC110522591 LOC105024333 other upstream 1980001 38890314 ~ 38897681 (+)
G349877 NA other upstream 2443633 38432179 ~ 38434024 (+)
G352136 LOC106608303 other downstream 111926 40990159 ~ 40990505 (+)
G352340 NA other downstream 332014 41210247 ~ 41210998 (+)
G352341 NA other downstream 332880 41211113 ~ 41214206 (+)
G352477 NA other downstream 487968 41366201 ~ 41366607 (+)
G353125 NA other downstream 1246443 42124676 ~ 42125759 (+)

Expression


Co-expression Network