G352136 (LOC106608303)


Basic Information

Item Value
gene id G352136
gene name LOC106608303
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 40990159 ~ 40990505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU398718
GGCTGGCTGTAAAACGAATGAATTCCTCCTCCTGGACCAATAATTCCCATCCCAATCCCGACTCCCGCCGAGTCCAAAGCCGATCTAGCTGCCAGAAGGTGCGCTCTGTGCGGCAAAGATTCCAATGGACGCCGCGTAACCGCGGGTGGCTCCTTATTCAAACCCAGAATCTCCTGGATTCCGAATCCTGTGCACTTGTGCGTCGTAGTCAAACGCATTTTTTGACGGTTGTTGCTGGAGTCCGGATCCCACTAGGTTTAGAGGCGAatactttttttctctccagtTTATTCAAAAAAAGTCTGAAAGAACAGTCACCTTCTTTTTTCCCCGTTATGacgtcagac

Function

NR:

description
visual system homeobox 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU398718 True 347 TUCP 0.50 1 40990159 40990505

Neighbor

gene id symbol gene type direction distance location
abcd4 abcd4 coding upstream 45155 40918240 ~ 40945004 (+)
LOC118964481 NA coding upstream 49192 40940631 ~ 40940967 (+)
hmbox1b LOC106608307 coding upstream 102654 40868340 ~ 40887505 (+)
LOC110521111 LOC106571044 coding upstream 121965 40778358 ~ 40868194 (+)
si:ch211-63o20.7 stk35 coding upstream 257808 40721526 ~ 40732661 (+)
LOC118964399 LOC106608301 coding downstream 47732 41038237 ~ 41041039 (+)
LOC110521114 LOC106608298 coding downstream 80977 41071482 ~ 41085688 (+)
LOC110522636 LOC106608297 coding downstream 436375 41426880 ~ 41445268 (+)
LOC110522641 LOC106608294 coding downstream 658287 41648792 ~ 41651426 (+)
LOC110522642 LOC106608292 coding downstream 674097 41664602 ~ 41675680 (+)
G352135 NA non-coding upstream 1517 40988427 ~ 40988642 (+)
G352130 NA non-coding upstream 13631 40975719 ~ 40976528 (+)
G352117 NA non-coding upstream 32954 40956893 ~ 40957205 (+)
G351974 NA non-coding upstream 49004 40936127 ~ 40941155 (+)
G352007 NA non-coding upstream 92719 40896128 ~ 40897440 (+)
G352158 NA non-coding downstream 4171 40994676 ~ 40994978 (+)
G352169 NA non-coding downstream 19050 41009555 ~ 41011855 (+)
G352173 NA non-coding downstream 21700 41012205 ~ 41012517 (+)
G352179 NA non-coding downstream 32282 41022787 ~ 41023049 (+)
G352181 NA non-coding downstream 36442 41026947 ~ 41101711 (+)
G351441 NA other upstream 853386 40134687 ~ 40136773 (+)
G350665 NA other upstream 1600685 39388141 ~ 39389474 (+)
G350211 NA other upstream 2085385 38903730 ~ 38904774 (+)
LOC110522591 LOC105024333 other upstream 2092503 38890314 ~ 38897681 (+)
G349877 NA other upstream 2556135 38432179 ~ 38434024 (+)
G352340 NA other downstream 219742 41210247 ~ 41210998 (+)
G352341 NA other downstream 220608 41211113 ~ 41214206 (+)
G352477 NA other downstream 375696 41366201 ~ 41366607 (+)
G353125 NA other downstream 1134171 42124676 ~ 42125759 (+)
LOC118964483 NA other downstream 1329195 42319401 ~ 42328637 (+)

Expression


Co-expression Network