G352169


Basic Information

Item Value
gene id G352169
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 41009555 ~ 41011855 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU398751
GTTATAAACAACATTAGAGACTGTAACCCTGTTAATAACAACAGTAGAGACCTTCACCATATTAATTACAACAGTAGAGACCTAGGTCTTCACCATGTTAATGACAACAGTAGAGACCCAGGTCTTCACTATGTTAATGACAACAGTAGAGACCTAGGTCTTCACCCTGTTAATAACAACAGTAGAGACGTTCACCCTGTTAATAACAACAGTAGAGACCTTCACCCTGTTAATAACAACAGTAGAGACCTTCACCCTGTTAATAACAACAGTAGAGACTTAGGTCTTCCCCCTGTTAATAACAACAGTAGAGACCTTCACCCTGTTAATGACAACAGTAGAGACCTTCACCATGTTAATAACAACAGTAGAGACCTTCACCATGTTAATAACAACAGTAGAGACCTTCACCATGTTAATAACAACAGTAGAGACGTTCACCCTGTTAATAACAACAGTAGAGACCTTCACCATGTTAATAACAACAGTAGAGACCTTCACCATGTTAATAACAACAGTAGAGACCTAGGTCTTCACCATGTTAATAACAACAGTAGAGA
>TU398756
GTTATAAACAACATTAGAGACTGTAACCCTGTTAATAACAACAGTAGAGACCTTCACCATATTAATTACAACAGTAGAGACCTAGGTCTTCACCATGTTAATGACAACAGTAGAGACCCAGGTCTTCACTATGTTAATGATAACAGTAGAGACCTAAGTCTTCACCATGTTAATGACAACAGTAGAGACCTAGGTCTTCACCATGTTAATAACAACAGTAGAGACCTAGGTCTTCACCATGTTAATAACAACAGTAGAGACCTTCACCATGTTAATAACAACAGTAGAGACCTTCACCCTGTTAATAACAACAGTAGAGACCTTCACCATGTTAATAACAACAGTAGAGACCTTCACCCTGTTAATAACAACAGTAGAGACTTAGGTCTTCACCATGTTAATAACAAC
>TU398755
TAATAACAACAGTAGAGACCTTCACCCTGTTAATAACAACAGTAGAGACCTTCACCATGTTAATAACAACAGTAGAGACCTTCACCCTGTTAATGACAACAGTAGAGACCTTCACCCTGTTAATAACAACAGTAGAGACCTTCACCATGTTAATAACAACAGTAGAGACCTTCACCCTGTTAATAACAACAGTAGAGACTTAGGTCTTCACCATGTTAATAACAAC

Function

NR:

description
PREDICTED: transcription termination factor 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU398751 False 560 lncRNA 0.39 3 41009555 41010393
TU398756 False 408 lncRNA 0.38 2 41009555 41011855
TU398755 True 226 lncRNA 0.38 2 41011570 41011855

Neighbor

gene id symbol gene type direction distance location
abcd4 abcd4 coding upstream 64551 40918240 ~ 40945004 (+)
LOC118964481 NA coding upstream 68588 40940631 ~ 40940967 (+)
hmbox1b LOC106608307 coding upstream 122050 40868340 ~ 40887505 (+)
LOC110521111 LOC106571044 coding upstream 141361 40778358 ~ 40868194 (+)
si:ch211-63o20.7 stk35 coding upstream 277204 40721526 ~ 40732661 (+)
LOC118964399 LOC106608301 coding downstream 26382 41038237 ~ 41041039 (+)
LOC110521114 LOC106608298 coding downstream 59627 41071482 ~ 41085688 (+)
LOC110522636 LOC106608297 coding downstream 415025 41426880 ~ 41445268 (+)
LOC110522641 LOC106608294 coding downstream 636937 41648792 ~ 41651426 (+)
LOC110522642 LOC106608292 coding downstream 652747 41664602 ~ 41675680 (+)
G352158 NA non-coding upstream 14577 40994676 ~ 40994978 (+)
G352135 NA non-coding upstream 20913 40988427 ~ 40988642 (+)
G352130 NA non-coding upstream 33027 40975719 ~ 40976528 (+)
G352117 NA non-coding upstream 52350 40956893 ~ 40957205 (+)
G351974 NA non-coding upstream 68400 40936127 ~ 40941155 (+)
G352173 NA non-coding downstream 350 41012205 ~ 41012517 (+)
G352179 NA non-coding downstream 10932 41022787 ~ 41023049 (+)
G352181 NA non-coding downstream 15092 41026947 ~ 41101711 (+)
G352194 NA non-coding downstream 43425 41055280 ~ 41060335 (+)
G352195 NA non-coding downstream 52362 41064217 ~ 41064737 (+)
G352136 LOC106608303 other upstream 19050 40990159 ~ 40990505 (+)
G351441 NA other upstream 872782 40134687 ~ 40136773 (+)
G350665 NA other upstream 1620081 39388141 ~ 39389474 (+)
G350211 NA other upstream 2104781 38903730 ~ 38904774 (+)
LOC110522591 LOC105024333 other upstream 2111899 38890314 ~ 38897681 (+)
G352340 NA other downstream 198392 41210247 ~ 41210998 (+)
G352341 NA other downstream 199258 41211113 ~ 41214206 (+)
G352477 NA other downstream 354346 41366201 ~ 41366607 (+)
G353125 NA other downstream 1112821 42124676 ~ 42125759 (+)
LOC118964483 NA other downstream 1307845 42319401 ~ 42328637 (+)

Expression


Co-expression Network