G352240


Basic Information

Item Value
gene id G352240
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 41144830 ~ 41147018 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU398849
gtaggtgtgctgaggtggagtttgtcaggttgtacctgtaggtgtgctgaggtggagtttgtctggttgtactgtacctgtaggtgtgctgaggtggagtttgtcaggttgtacctgtaggtgtgctgaggtggagtttgtcaggttgtacctgtaggtgtgctgaggtggagtttgtcaggttgtacctgtaggtgtgctgaggtggagtttgtcaggttgtactgtacctgtaggtgtgctgaggtggagtttgtctggttgtactgtacctgtaggtgtgctgaggtggagtttgtcaggttgtactgtaggtgtgctgaggtggagtttgtctggttgtactgtacctgtaggtgtgctgaggtggagtttgtctggttgtacctgtaggtgtgctgaggtggagtttgtcaggttgtactgtacctgtaggtgtgctgaggtggagtttgtctggttgtactgtacctgtaggtgtgctgaggtggagtttgtctggttgtactgtacctgtaggtgtgctgaggtggagtttgtctggttgtacctgtaggtgtgctgaggtggagtttgtcaggttgtactgtacctgtaggtgtgctgaggtggagtttgtctggttgtactgtacctgtaggtgtgctgaggtggagtttgtctggttgtactgtacctgtaggtgtgctgaggtggagtttgtctggttgtacctgtaggtgtgctgaggtggagtttgtctggttgtactgtacctgtaggtgtgctgaggtAGAGTTCATCTGTTCCTGCCACTGTTTCCACTGTAACTCGTAGTCCTGTAGCTGGTCTTTATGTGGGTAGGACTGGAACTGCTCTTGCCACTGGCTGAAGGTGCGGCCCCAGTCTCCAAACACCGGGTcaaactgctgctgctgcttctcatAGTGACTCAGCTGCATGGCCATAGA

Function

NR:

description
YLP motif-containing protein 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU398849 True 950 lncRNA 0.51 2 41144830 41147018

Neighbor

gene id symbol gene type direction distance location
LOC110521114 LOC106608298 coding upstream 59142 41071482 ~ 41085688 (+)
LOC118964399 LOC106608301 coding upstream 103791 41038237 ~ 41041039 (+)
abcd4 abcd4 coding upstream 199826 40918240 ~ 40945004 (+)
LOC118964481 NA coding upstream 203863 40940631 ~ 40940967 (+)
hmbox1b LOC106608307 coding upstream 257325 40868340 ~ 40887505 (+)
LOC110522636 LOC106608297 coding downstream 279862 41426880 ~ 41445268 (+)
LOC110522641 LOC106608294 coding downstream 501774 41648792 ~ 41651426 (+)
LOC110522642 LOC106608292 coding downstream 517584 41664602 ~ 41675680 (+)
LOC110522643 LOC106608291 coding downstream 529243 41676261 ~ 41681946 (+)
LOC110522644 ptk2b coding downstream 737247 41884265 ~ 41934580 (+)
G352231 NA non-coding upstream 17987 41125004 ~ 41126843 (+)
G352181 NA non-coding upstream 43119 41026947 ~ 41101711 (+)
G352213 NA non-coding upstream 47124 41091055 ~ 41097706 (+)
G352195 NA non-coding upstream 80093 41064217 ~ 41064737 (+)
G352316 NA non-coding downstream 37325 41184343 ~ 41184578 (+)
G352319 NA non-coding downstream 39406 41186424 ~ 41186634 (+)
G352329 NA non-coding downstream 45939 41192957 ~ 41193335 (+)
G352341 NA non-coding downstream 64095 41211113 ~ 41214206 (+)
G352344 NA non-coding downstream 72702 41219720 ~ 41221378 (+)
G352136 LOC106608303 other upstream 154325 40990159 ~ 40990505 (+)
G351441 NA other upstream 1008057 40134687 ~ 40136773 (+)
G350665 NA other upstream 1755356 39388141 ~ 39389474 (+)
G350211 NA other upstream 2240056 38903730 ~ 38904774 (+)
LOC110522591 LOC105024333 other upstream 2247174 38890314 ~ 38897681 (+)
G352340 NA other downstream 63229 41210247 ~ 41210998 (+)
G352477 NA other downstream 219183 41366201 ~ 41366607 (+)
G353125 NA other downstream 977658 42124676 ~ 42125759 (+)
LOC118964483 NA other downstream 1172682 42319401 ~ 42328637 (+)

Expression


Co-expression Network