G352472


Basic Information

Item Value
gene id G352472
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 41446367 ~ 41447543 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU399148
ggctgacacagCAGTGACAATTTTCTTAGTTTGTTTCTATGGCAACTGGAGTGGAAGGAGAAGGGACCCACGAGCTGCTCTCTTTGAAGACTTTCTCGACAGGtttgaataaataaaataaataagggACCCAAACACAATATGCTGGAAGACATTGATCTGAAAAACTATTACGTAACAGATTTTGtgagatatatattttttctttaaaATGGCTAATATTCTCTGGTGGTGTCATATGATTGATGTC
>TU399149
ggctgacacagCAGTGACAATTTTCTTAGTTTGTTTCTATGGCAACTGGAGTGGAAGGAGAAGGGACCCACGAGCTGCTCTCTTTGAAGACTTTCTCGACAGGtttgaataaataaaataaataagggACCCAAACACAATATGCTGGAAGACATTGATCTGAAAAACTATTACGTAACAGATTTTGtgagatatatattttttctttaaaATGGCTAATATTCTCTGGTGGTGTCATATGATTGATGTCCTGTTAATGTGTATCTGTCTGTTATATTACACCATGATCCTCATCATATTGTTTTGCTGGTGATTTTGAATACCTACTCTATGGTCATGCCAGGTTTGCTATTTATGAGTAGATGAAACATTAAGCAAAGGCATGATAGCTGG
>TU399150
ggctgacacagCAGTGACAATTTTCTTAGTTTGTTTCTATGGCAACTGGAGTGGAAGGAGAAGGGACCCACGAGCTGCTCTCTTTGAAGACTTTCTCGACAGGtttgaataaataaaataaataagggACCCAAACACAATATGCTGGAAGACATTGATCTGAAAAACTATTACGTAACAGATTTTGtgagatatatattttttctttaaaATGGCTAATATTCTCTGGTGGTGTCATATGATTGATGTCCTGTTAATGTGTATCTGTCTGTTATATTACACCATGATCCTCATCATATTGTTTTGCTGGTGATTTTGAATACCTACTCTATGGTCATGCCAGGTTTGCTATTTATGAGTAGATGAAACATTAAGCAAAGGCATGATAGCTGGCACAGTTGATCGtcttgtattttttaaaaatatttaaaaacaaataaattCAGAGTAGTCAGCACATCAGAGTAGTCAGCACATCAGAGTTATTATCTCCCCTGTAGCGAAGCCTCAAACATCAAACCAAATCACAAGCCATGTTTGGGTTTGTTAAAAGTGCCTAGAGGTTACCGCCCACAATGCAACAGTCACATGACGACTTAGAGAAAGAGGACTTCCAGGAACCAAAAGCACATGTGCATGTGCCAGTGCCATTGAGGAATTTCacaattttaaagtagtcaactgggtgggacttcctatgcaAACATTGACTTTGTAACTGTTTAAACAGCACACTCCATGTGGCAGTATGCACATTCATAGACGTAGAAAAAGAAAATGTACCatttcaaaatggagatggcctcaatggctcTGTCCGTACACAATATCACAGACAGATACAATGTTGCGTCCTCTAAATATCTCTCTGctttatgacaaaaaaaatgaGTGGTTGAATCCCAAATCACCCCCCCTTTCCCGCTCGCCACTTCGACCTCCTCCATTTTGAACACGTGTCCCAAAGCTGAGGGAGTGAAAATGATCGATGGAGTTGGGGCTAATTAGCCTACAAAAGAATGGAGAGGCGTGCCTAATTATATGGCATGTGCATTTGTTTATGTCTGATGTTGAGACTTGACACATGTAAATCCATCTTTAACTGTTACTGAGGTTTCTATTTTGTAGACGACAGGGGATTCGTTCCTTTTAAGGGGGagtaggaaggagagggagg

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU399148 False 250 lncRNA 0.37 1 41446367 41446616
TU399149 False 393 lncRNA 0.37 1 41446367 41446759
TU399150 True 1177 lncRNA 0.40 1 41446367 41447543

Neighbor

gene id symbol gene type direction distance location
LOC110522636 LOC106608297 coding upstream 1099 41426880 ~ 41445268 (+)
LOC110521114 LOC106608298 coding upstream 360679 41071482 ~ 41085688 (+)
LOC118964399 LOC106608301 coding upstream 405328 41038237 ~ 41041039 (+)
abcd4 abcd4 coding upstream 501363 40918240 ~ 40945004 (+)
LOC118964481 NA coding upstream 505400 40940631 ~ 40940967 (+)
LOC110522641 LOC106608294 coding downstream 201249 41648792 ~ 41651426 (+)
LOC110522642 LOC106608292 coding downstream 217059 41664602 ~ 41675680 (+)
LOC110522643 LOC106608291 coding downstream 228718 41676261 ~ 41681946 (+)
LOC110522644 ptk2b coding downstream 436722 41884265 ~ 41934580 (+)
LOC118964483 NA coding downstream 871858 42319401 ~ 42328637 (+)
G352493 NA non-coding upstream 23594 41422560 ~ 41422773 (+)
G352481 NA non-coding upstream 67480 41378562 ~ 41378887 (+)
G352478 NA non-coding upstream 78643 41367455 ~ 41367724 (+)
G352457 NA non-coding upstream 113837 41332193 ~ 41332530 (+)
G352389 NA non-coding upstream 125029 41321053 ~ 41321338 (+)
G352507 NA non-coding downstream 585 41448128 ~ 41448430 (+)
G352556 NA non-coding downstream 13448 41460991 ~ 41461212 (+)
G352558 NA non-coding downstream 17386 41464929 ~ 41465167 (+)
G352562 NA non-coding downstream 27940 41475483 ~ 41475845 (+)
G352563 NA non-coding downstream 29293 41476836 ~ 41477260 (+)
G352477 NA other upstream 79760 41366201 ~ 41366607 (+)
G352341 NA other upstream 232418 41211113 ~ 41214206 (+)
G352340 NA other upstream 235369 41210247 ~ 41210998 (+)
G352136 LOC106608303 other upstream 455862 40990159 ~ 40990505 (+)
G351441 NA other upstream 1309594 40134687 ~ 40136773 (+)
G353125 NA other downstream 677133 42124676 ~ 42125759 (+)
G353328 LOC106608329 other downstream 995212 42442755 ~ 42443381 (+)
G353339 NA other downstream 1003489 42451032 ~ 42451409 (+)
G353820 NA other downstream 1463343 42910886 ~ 42912213 (+)

Expression


Co-expression Network