G352596


Basic Information

Item Value
gene id G352596
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 41590395 ~ 41682746 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU399294
GACTGGGTCCCGCTGTATTGCTCAGGCTGCACTACAGCGTCTATTCACAGGCGCGATCCCACTACTGAGCGGCACGGGGGCTTTGGCCTGCtccgtttccgacCTGGGTCCCGCTGTATTGCTCAGGCTGCACTACAGCGTCTATTCACAGGCGCGATCCCACTACTGAGCGGCACGGGGGCTTTGGCCTGCtccgtttccgacctgggccggtgcACCCCTCCTTAGACgacctggtggtcccgggctcccccaggagcaccatatcgataccgaacttagtgCGGACACCCGATCGGCATAGTCCACTGGAGCTCAGAACTCCTGAGCTCAAACGATCCGCCAGCCTAAGCCTCCCAGCAACTTGGATTACAGGCGCACGCCACTGCGCCCGGCGAG
>TU399295
GACTGGGTCCCGCTGTATTGCTCAGGCTGCACTACAGCGTCTATTCACAGGCGCGATCCCACTACTGAGCGGCACGGGGGCTTTGGACGGAAAAAAAAAGCTAAAAAAGACTGGGTCCCGCTGTATTGCTCAGGCTGCACTACAGCGTCTATTCACAGGCGCGATCCCACTACTGAGCGGCACGGGGGCTTTGGCCTGCtccgtttccgacctgggccggtgcACCCCTCCTTAGACgacctggtggtcccgggctcccccaggagcaccatatcgataccgaacttagtgCGGACACCCGATCGGCATAGTCCACTGGAGCTCAGAACTCCTGAGCTCAAACGATCCGCCAGCCTAAGCCTCCCAGCAACTTGGATTACAGGCGCACGCCACTGCGCCCGGCGAG
>TU399298
GACTGGGTCCCGCTGTATTGCTCAGGCTGCACTACAGCGTCTATTCACAGGCGCGATCCCACTACTGAGCGGCACGGGGGCTTTGGCCTGCtccgtttccgacctgggccggtgcACCCCTCCTTAGACgacctggtggtcccgggctcccccaggagcaccatatcgataccgaacttagtgCGGACACCCGATCGGCATAGTCCACTGGAGCTCAGAACTCCTGAGCTCAAACGATCCGCCAGCCTAAGCCTCCCAGCAACTTGGATTACAGGCGCACGCCACTGCGCCCGGCCCCCTCCTTAGACGACCTGGTGGTC
>TU399299
GACTGGGTCCCGCTGTATTGCTCAGGCTGCACTACAGCGTCTATTCACAGGCGCGATCCCACTACTGAGCGGCACGGGGGCTTTGGCCTGCtccgtttccgacctgggccggtgcACCCCTCCTTAGACgacctggtggtcccgggctcccccaggagcaccatatcgataccgaacttAGGCTGCACTACAGCGTCTATTCACAGGCGCGATCCCACTACTGAGCGGCACGGGGGCTTTGGCCTGCtccgtttccgacctgggccggtgcACCCCTCCTTAGACgacctggtggtcccgggctcccccaggagcaccatatcgataccgaacttagtgCGGACACCCGATCGGCATAGTCCACTGGAGCTCAGAACTCCTGAGCTCAAACGATCCGCCAGCCTAAGCCTCCCAGCAACTTGGATTACAGGCGCACGCCACTGCGCCCGGCGAG
>TU399300
GACTGGGTCCCGCTGTATTGCTCAGGCTGCACTACAGCGTCTATTCACAGGCGCGATCCCACTACTGAGCGGCACGGGGGCTTTGGCCTGCtccgtttccgacctgggccggtgcACCCCTCCTTAGACgacctggtggtcccgggctcccccaggagcaccatatcgataccgaacttagtgCGGACACCCGATCGGCATAGTCCACTGGAGCTCAGAACTCCTGAGCTCAAACGATCCGCCAGCCTAAGCCTCCCAGCAACTTGGATTACAGGCGCACGCCACtgcACCCCTCCTTAGACGACCTGGTGGTC
>TU399301
GACTGGGTCCCGCTGTATTGCTCAGGCTGCACTACAGCGTCTATTCACAGGCGCGATCCCACTACTGAGCGGCACGGGGGCTTTGGCCTGCtccgtttccgacctgggccggtgcACCCCTCCTTAGACgacctggtggtcccgggctcccccaggagcaccatatcgataccgaacttagtgCGGACACCCGATCGGCATAGTCCACTGGAGCTCAGAACTCCTGAGCTCAAACGATCCGCCAGCCTAAGCCTCCCAGCAACTTGGATTACAGGCGCACGCCACTGCGCCCGGCCCTCCTTAGACGACCTGGTGGTC

Function

NR:

description
PREDICTED: sphingosine-1-phosphate lyase 1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU399294 False 399 lncRNA 0.63 2 41590395 41682746
TU399295 False 406 lncRNA 0.60 2 41590395 41682746
TU399298 False 320 lncRNA 0.63 2 41590395 41591867
TU399299 False 454 lncRNA 0.63 2 41590395 41682746
TU399300 False 314 lncRNA 0.62 2 41590395 41591867
TU399301 True 318 lncRNA 0.63 2 41590395 41591867

Neighbor

gene id symbol gene type direction distance location
LOC110522636 LOC106608297 coding upstream 145127 41426880 ~ 41445268 (+)
LOC110521114 LOC106608298 coding upstream 504707 41071482 ~ 41085688 (+)
LOC118964399 LOC106608301 coding upstream 549356 41038237 ~ 41041039 (+)
abcd4 abcd4 coding upstream 645391 40918240 ~ 40945004 (+)
LOC110522644 ptk2b coding downstream 201519 41884265 ~ 41934580 (+)
LOC118964483 NA coding downstream 636655 42319401 ~ 42328637 (+)
eif2b4 LOC106608321 coding downstream 646996 42329742 ~ 42364354 (+)
LOC110522651 LOC106608319 coding downstream 688074 42370820 ~ 42433129 (+)
si:ch211-278j3.3 LOC106608328 coding downstream 777612 42460358 ~ 42514461 (+)
G352620 NA non-coding upstream 11704 41577575 ~ 41578691 (+)
G352591 NA non-coding upstream 55847 41534116 ~ 41534548 (+)
G352574 NA non-coding upstream 59675 41530331 ~ 41530720 (+)
G352573 NA non-coding upstream 61296 41527930 ~ 41529099 (+)
G352572 NA non-coding upstream 62635 41527467 ~ 41527760 (+)
G352679 LOC106608275 non-coding downstream 8136 41690882 ~ 41691650 (+)
G352678 LOC106608275 non-coding downstream 10652 41693398 ~ 41705825 (+)
G352677 zc3h14 non-coding downstream 19808 41702554 ~ 41703383 (+)
G352889 NA non-coding downstream 96910 41779656 ~ 41779863 (+)
G352898 NA non-coding downstream 103077 41785823 ~ 41786631 (+)
G352477 NA other upstream 223788 41366201 ~ 41366607 (+)
G352341 NA other upstream 376446 41211113 ~ 41214206 (+)
G352340 NA other upstream 379397 41210247 ~ 41210998 (+)
G352136 LOC106608303 other upstream 599890 40990159 ~ 40990505 (+)
G351441 NA other upstream 1453622 40134687 ~ 40136773 (+)
G353125 NA other downstream 441930 42124676 ~ 42125759 (+)
G353328 LOC106608329 other downstream 760009 42442755 ~ 42443381 (+)
G353339 NA other downstream 768286 42451032 ~ 42451409 (+)
G353820 NA other downstream 1228140 42910886 ~ 42912213 (+)

Expression


Co-expression Network