G352679 (LOC106608275)


Basic Information

Item Value
gene id G352679
gene name LOC106608275
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 41690882 ~ 41691650 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU399400
AATCGGTTCAAAGCACGTGAATGCACACGACTTCGTTGCTTCCAGTTCACACGTACTGTTTTCTGAGTTTCCCCCACATGTCATGAATGCAGCACAAGGGGGAGGGGCTTAAAGGgggtgtgtctgtacctggtcTGACTGGAGGGGTGTAGGGGGCAGGTCCTCTGCGGCTGACGTGAGTGAAGGGACAATCTGGTTTGGAACACTTGCCGTCAAACTTACAGTTGGGATGGACGAACAGGCATTTGTCCCCAAACTTACAGCTGGGGAAAGTTTTGCACTGAGTGGTAGGGTGGTGGTAAACGCACTCATCTCCACTCTTACAGACGGGCCAGAACTTACACCTCTCCAGAACCTTCTGTCTCTTCACAGGACCCGCCTCCTCAGTCTCCATCCCTAACTCTGAAACCGAGGAACGACATGATGACAGAGTTTAGATGAGGGCCGGCTTTCCAGACCAGAAACCACTCCGTAGAAAGATACCCAGAGAGCTAGGTCGATGTTTCTTACAAAAAGCACACCAAACACAACATTGACTCATACCTTATCCAGCAGTGTCAAAGCTGTTTAGTGAGAACCTTGGTCAGCCCAAATTCTCCTTACCTCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU399400 True 607 lncRNA 0.50 2 41690882 41691650

Neighbor

gene id symbol gene type direction distance location
LOC110522643 LOC106608291 coding upstream 8936 41676261 ~ 41681946 (+)
LOC110522642 LOC106608292 coding upstream 15202 41664602 ~ 41675680 (+)
LOC110522641 LOC106608294 coding upstream 39456 41648792 ~ 41651426 (+)
LOC110522636 LOC106608297 coding upstream 245614 41426880 ~ 41445268 (+)
LOC110521114 LOC106608298 coding upstream 605194 41071482 ~ 41085688 (+)
LOC110522644 ptk2b coding downstream 192615 41884265 ~ 41934580 (+)
LOC118964483 NA coding downstream 627751 42319401 ~ 42328637 (+)
eif2b4 LOC106608321 coding downstream 638092 42329742 ~ 42364354 (+)
LOC110522651 LOC106608319 coding downstream 679170 42370820 ~ 42433129 (+)
si:ch211-278j3.3 LOC106608328 coding downstream 768708 42460358 ~ 42514461 (+)
G352596 NA non-coding upstream 8136 41590395 ~ 41682746 (+)
G352644 NA non-coding upstream 71999 41618405 ~ 41618883 (+)
G352637 NA non-coding upstream 81572 41607985 ~ 41609310 (+)
G352620 NA non-coding upstream 112191 41577575 ~ 41578691 (+)
G352591 NA non-coding upstream 156334 41534116 ~ 41534548 (+)
G352678 LOC106608275 non-coding downstream 1748 41693398 ~ 41705825 (+)
G352677 zc3h14 non-coding downstream 10904 41702554 ~ 41703383 (+)
G352889 NA non-coding downstream 88006 41779656 ~ 41779863 (+)
G352898 NA non-coding downstream 94173 41785823 ~ 41786631 (+)
G352896 NA non-coding downstream 95111 41786761 ~ 41788891 (+)
G352477 NA other upstream 324275 41366201 ~ 41366607 (+)
G352341 NA other upstream 476933 41211113 ~ 41214206 (+)
G352340 NA other upstream 479884 41210247 ~ 41210998 (+)
G352136 LOC106608303 other upstream 700377 40990159 ~ 40990505 (+)
G351441 NA other upstream 1554109 40134687 ~ 40136773 (+)
G353125 NA other downstream 433026 42124676 ~ 42125759 (+)
G353328 LOC106608329 other downstream 751105 42442755 ~ 42443381 (+)
G353339 NA other downstream 759382 42451032 ~ 42451409 (+)
G353820 NA other downstream 1219236 42910886 ~ 42912213 (+)

Expression


Co-expression Network