G352678 (LOC106608275)


Basic Information

Item Value
gene id G352678
gene name LOC106608275
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 41693398 ~ 41705825 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU399396
GGGTATTGTGGTTCCCCCTGCAGTCTGTGGTGGATGCTGAGTTTGGGTTTTGTTCCGAGGTGGATGGAGGGGTCAGGCATGGTGGTCTTGGCTGGTTTAGGATAACTGTCATCCGCTTCCATGTCACAGTCTCCTAGGTTACCCAGGGGGCTAGGAACCCCATCCAGGGTCACAATGAACTTAGGACTGGCTGACCCCGCGGCTTCAGCCTTCTCACTGCtaggagggaggcagaggagagagggaggtacagacagacagaaaagcaTTATGACAGTTTTG
>TU399399
GGGTATTGTGGTTCCCCCTGCAGTCTGTGGTGGATGCTGAGTTTGGGTTTTGTTCCGAGGTGGATGGAGGGGTCAGGCATGGTGGTCTTGGCTGGTTTAGGATAACTGTCATCCGCTTCCATGTCACAGTCTCCTAGGTTACCCAGGGGGCTAGGAACCCCATCCAGGGTCACAATGAACTTAGGACTGGCTGACCCCGCGGCTTCAGCCTTCTCACCCTGACGAGGTGCCAGTGTCAGAGTACAGCTGAGGCCTCAGGGACGCgggttCTACTGCCACAGACCTCAGCTTCTCCAGGACTCCATGTAACCAGACAGTAAACTTGATGGTATTGTTGCCGAGGAAGAGGGACAGGTCATCAGACATCTGCTGGGAAGTCTTCTTGTTGGCCACCATCACCATGATATAGTCTGGTAACTCTTCGtCAACATAGGCACCGAGTTCTTGAAGCTTCCCCTTGATAGCAGCCCGTATTTTCTTGCTTATCTCTGTACCGATCTCCATGTTTGCGTGTGCTGTACCTAATACAATAAGAGTCgttattaatttaaaaaataggTTATTATTCACTAAACCAACACGTCCTGCCTACAAAAACACTAACGCCACTGTATGTTAAATGCTAATGCTAATAGCAAACACATTCGCAATGCAATGTGGGATGGTGGCGTTTCCGGTAGCATAAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU399396 False 282 lncRNA 0.55 2 41693398 41693729
TU399399 True 686 lncRNA 0.49 6 41693398 41705825

Neighbor

gene id symbol gene type direction distance location
LOC110522643 LOC106608291 coding upstream 11452 41676261 ~ 41681946 (+)
LOC110522642 LOC106608292 coding upstream 17718 41664602 ~ 41675680 (+)
LOC110522641 LOC106608294 coding upstream 41972 41648792 ~ 41651426 (+)
LOC110522636 LOC106608297 coding upstream 248130 41426880 ~ 41445268 (+)
LOC110521114 LOC106608298 coding upstream 607710 41071482 ~ 41085688 (+)
LOC110522644 ptk2b coding downstream 178440 41884265 ~ 41934580 (+)
LOC118964483 NA coding downstream 613576 42319401 ~ 42328637 (+)
eif2b4 LOC106608321 coding downstream 623917 42329742 ~ 42364354 (+)
LOC110522651 LOC106608319 coding downstream 664995 42370820 ~ 42433129 (+)
si:ch211-278j3.3 LOC106608328 coding downstream 754533 42460358 ~ 42514461 (+)
G352679 LOC106608275 non-coding upstream 1748 41690882 ~ 41691650 (+)
G352596 NA non-coding upstream 10652 41590395 ~ 41682746 (+)
G352644 NA non-coding upstream 74515 41618405 ~ 41618883 (+)
G352637 NA non-coding upstream 84088 41607985 ~ 41609310 (+)
G352620 NA non-coding upstream 114707 41577575 ~ 41578691 (+)
G352889 NA non-coding downstream 73831 41779656 ~ 41779863 (+)
G352898 NA non-coding downstream 79998 41785823 ~ 41786631 (+)
G352896 NA non-coding downstream 80936 41786761 ~ 41788891 (+)
G352920 NA non-coding downstream 105073 41810898 ~ 41811111 (+)
G352930 NA non-coding downstream 116344 41822169 ~ 41822957 (+)
G352477 NA other upstream 326791 41366201 ~ 41366607 (+)
G352341 NA other upstream 479449 41211113 ~ 41214206 (+)
G352340 NA other upstream 482400 41210247 ~ 41210998 (+)
G352136 LOC106608303 other upstream 702893 40990159 ~ 40990505 (+)
G351441 NA other upstream 1556625 40134687 ~ 40136773 (+)
G353125 NA other downstream 418851 42124676 ~ 42125759 (+)
G353328 LOC106608329 other downstream 736930 42442755 ~ 42443381 (+)
G353339 NA other downstream 745207 42451032 ~ 42451409 (+)
G353820 NA other downstream 1205061 42910886 ~ 42912213 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00000480 NA coding CM030141.1 CM030141.1 15383657 ~ 15390950 (-)