G352898


Basic Information

Item Value
gene id G352898
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 41785823 ~ 41786631 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU399660
GTACCCATTGAACAAGAAAATTACATTTCATTAGAGAAAAAATGTAAGATTTGTGGATTTTGTAGAGCCAAGCTCTTTATGTACAGCATATTGCACTAGACAAAACAAATATCTCCCtcgttccccctctctttccccttgtTTCACACTGTTTGAAAACCATGCAGGGCTCTCAGAAGCGTCTCATAACGccgcctgcatcccaaatggctccctatgttatgtactacttttgaccagggcccatagagctctggtcaaaagtagtgtactacataaggtatagggtgccattttggacagacTGTTCTGCTACATTTAGACTGGGCCTTCCTTCATAAAACACACCGCCCCGACCGATGTGGAATCCTTGAGACAGTTCTGAGAGCTCTAATGATGTGTTCTAGAATGATGTGATATTTGAAGATGGTTCTGAGAGCTCTACTGATGTGTTCTAGAATGATGTGATATGAAGGCAATGCTAAAGAGAGTCCTAGTTCAACAGAGCAGGAGTTAGATGGAAGTTCACAATGTTTCAGTTCATATAGTATTTAAAAAAAGAGATTGTGTTTTTTCCTCTCAATTCATTTACATTCAAACACAGATTTCAGGAATGCTGGGACATGCATTTTTACTCCATATACAGAATTATCAAATATCAAAAACAGCCCTTGAACTGAGAACGACACAGCGGACTTAAATTGGTAAAAACCAAAAAGCATGTCACAACACTTAAAAAgcgatctttaaaaaaaaaaaaaaaatcatgttttcGGACTTCATTgttacatttgttttgtttttttaca
>TU399662
GTACCCATTGAACAAGAAAATTACATTTCATTAGAGAAAAAATGTAAGATTTGTGGATTTTGTAGAGCCAAGCTCTTTATGTACAGCATATTGCACTAGACAAAACAAATATCTCCCtcgttccccctctctttccccttgtTTCACACTGTTTGAAAACCATGCAGGGCTCTCAGAAGCGTCTCATAACGccgcctgcatcccaaatggctccctatgttatgtactacttttgaccagggcccatagagctctggtcaaaagtagtgtactacataaggtatagggtgccattttggacagacTGTTCTGCTACATTTAGACTGGGCCTTCCTTCATAAAACACACCGCCCCGACCGATGTGGAATCCTTGAGACAGTTCTGAGAGCTCTAATGATGTGTTCTAGAATGATGTGATATTTGAAGATGGTTCTGAGAGCTCTACTGATGTGTTCTAGAATGATGTGATATGAAGGCAATGCTAAAGAGAGTCCTAGTTCAACAGAGCAGGAGTTAGATGGAAGTTCACAATGTTTCAGTTCATATAGTATTTAAAAAAAGAGATTGTGTTTTTTCCTCTCAATTCATTTACATTCAAACACAGATTTCAGGAATGCTGGGACATGCATTTTTACTCCATATACAGAATTATCAAATATCAAAAACAGCCCTTGAACTGAGAACGACACAGCGGACTTAAATTGGTAAAAACCAAAAAGCATGTCACAACACTTAAAAAgc
>TU399661
TTTTGTAGAGCCAAGCTCTTTATGTACAGCATATTGCACTAGACAAAACAAATATCTCCCtcgttccccctctctttccccttgtTTCACACTGTTTGAAAACCATGCAGGGCTCTCAGAAGCGTCTCATAACGccgcctgcatcccaaatggctccctatgttatgtactacttttgaccagggcccatagagctctggtcaaaagtagtgtactacataaggtatagggtgccattttggacagacTGTTCTGCTACATTTAGACTGGGCCTTCCTTCATAAAACACACCGCCCCGACCGATGTGGAATCCTTGAGACAGTTCTGAGAGCTCTAATGATGTGTTCTAGAATGATGTGATATTTGAAGATGGTTCTGAGAGCTCTACTGATGTGTTCTAGAATGATGTGATATGAAGGCAATGCTAAAGAGAGTCCTAGTTCAACAGAGCAGGAGTTAGATGGAAGTTCACAATGTTTCAGTTCATATAGTATTTAAAAAAAGAGATTGTGTTTTTTCCTCTCAATTCATTTACATTCAAACACAGATTTCAGGAATGCTGGGACATGCATTTTTACTCCATATACAGAATTATCAAATATCAAAAACAGCCCTTGAACTGAGAACGACACAGCGGACTTAAATTGGTAAAAACCAAAAAGCATGTCACAACACTTAAAAAgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU399660 False 809 lncRNA 0.38 1 41785823 41786631
TU399662 False 741 lncRNA 0.40 1 41785823 41786563
TU399661 True 684 lncRNA 0.40 1 41785880 41786563

Neighbor

gene id symbol gene type direction distance location
LOC110522643 LOC106608291 coding upstream 103877 41676261 ~ 41681946 (+)
LOC110522642 LOC106608292 coding upstream 110143 41664602 ~ 41675680 (+)
LOC110522641 LOC106608294 coding upstream 134397 41648792 ~ 41651426 (+)
LOC110522636 LOC106608297 coding upstream 340555 41426880 ~ 41445268 (+)
LOC110521114 LOC106608298 coding upstream 700135 41071482 ~ 41085688 (+)
LOC110522644 ptk2b coding downstream 97634 41884265 ~ 41934580 (+)
LOC118964483 NA coding downstream 532770 42319401 ~ 42328637 (+)
eif2b4 LOC106608321 coding downstream 543111 42329742 ~ 42364354 (+)
LOC110522651 LOC106608319 coding downstream 584189 42370820 ~ 42433129 (+)
si:ch211-278j3.3 LOC106608328 coding downstream 673727 42460358 ~ 42514461 (+)
G352889 NA non-coding upstream 5960 41779656 ~ 41779863 (+)
G352678 LOC106608275 non-coding upstream 79998 41693398 ~ 41705825 (+)
G352677 zc3h14 non-coding upstream 82440 41702554 ~ 41703383 (+)
G352679 LOC106608275 non-coding upstream 94173 41690882 ~ 41691650 (+)
G352596 NA non-coding upstream 103077 41590395 ~ 41682746 (+)
G352896 NA non-coding downstream 130 41786761 ~ 41788891 (+)
G352920 NA non-coding downstream 24267 41810898 ~ 41811111 (+)
G352930 NA non-coding downstream 35538 41822169 ~ 41822957 (+)
G352932 NA non-coding downstream 37335 41823966 ~ 41824172 (+)
G352939 NA non-coding downstream 44132 41830763 ~ 41831265 (+)
G352477 NA other upstream 419216 41366201 ~ 41366607 (+)
G352341 NA other upstream 571874 41211113 ~ 41214206 (+)
G352340 NA other upstream 574825 41210247 ~ 41210998 (+)
G352136 LOC106608303 other upstream 795318 40990159 ~ 40990505 (+)
G351441 NA other upstream 1649050 40134687 ~ 40136773 (+)
G353125 NA other downstream 338045 42124676 ~ 42125759 (+)
G353328 LOC106608329 other downstream 656124 42442755 ~ 42443381 (+)
G353339 NA other downstream 664401 42451032 ~ 42451409 (+)
G353820 NA other downstream 1124255 42910886 ~ 42912213 (+)

Expression


Co-expression Network